barSeed - Barley Seed Development Database

Probe CUST_17136_PI390587928

Source Contig U35_44871

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17136_PI390587928	Hv_44K_v2	AGAGCCTAGCAGTAAAACATCAAGGCTCTGTATTATATTGTTGGCCAAAGTTTATAGATA	122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251744.1	4301	2e-24	3417 - 3476	100	60 / 60	plus	ABC13698 ABC17832 ABC43092
MLOC	MLOC_28605.1	1262	2e-24	133 - 192	100	60 / 60	plus	ABC17832 ABC43092
MLOC	MLOC_32863.1	301	3e-21	106 - 165	97	58 / 60	minus	ABC43092
JLOC1	JLOC1_19159.1	512	8e-25	137 - 196	100	60 / 60	plus
Harvest21	ABC43092	608	3e-25	123 - 182	100	60 / 60	minus	ABC43092
Harvest35	U35_44871	608	3e-25	123 - 182	100	60 / 60	minus

Contig Sequence (608 bp)

>U35_44871 608 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGGAAAACTAACATACATTTTTCTAGAAGTAGAAATACTGATT
TGTAGCATTACCAAGTCAACCATCTCAAGTGATGTAAATATAAATAGATCAGTATATGTA
CATATCTATAAACTTTGGCCAACAATATAATACAGAGCCTTGATGTTTTACTGCTAGGCT
CTCCTATTCCAATAATCGAATCCTTGTATAAAGTACAGCAATTTTCTCACGTGTTATGAT
ATTTCTGTAGGAAGTCAACAATAAGCTTCTTGTTCTCCGGCTACTCATTTTTCAGGGCCA
TCTTCTTGTCCTTTCTTTGTAGAGTCCCCTTCTCCCTTATCCTTTCCCCTTGTTATGATC
CTCTAGTAGTATTCCTGTATTTGTAGAAGAACTGTCCTTTTAATGTACTGGTCGCTAGAA
TGATATATCTGCAAACATGAAAATTGCCAAGCAGTCGTATAAGTATGATGATACCGACTT
GGTTATCCCATGAACCAAAACATTTCCAGAATGTTATAACAAAGGCCAGTAGCATAACAA
AATGGTATTCTTTTCTATATACAAAAAATGAGAGGCAGAAAACATCTCCTTGCTTCATGA
AACGTGAG

Homology of Contig U35_44871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None