barSeed - Barley Seed Development Database

Probe CUST_1700_PI390587928

Source Contig U35_14031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1700_PI390587928	Hv_44K_v2	TTAGTGGACCGGAATGCGCTTCCGGTCGTAGTTGGTTACCGATTCCCGTGCTAGGTCTCT	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364394	3569	2e-24	923 - 982	100	60 / 60	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC02587 ABC10055 ABC19867 ABC31599 ABC32138 ABC47839
MLOC	AK375440	790	2e-24	516 - 575	100	60 / 60	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_37939.1	220	2e-24	52 - 111	100	60 / 60	plus	ABC00102 ABC00570
JLOC1	JLOC1_24617.1	679	8e-25	52 - 111	100	60 / 60	plus
Harvest21	ABC00967	733	3e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC00570	683	3e-25	509 - 568	100	60 / 60	plus	ABC00570
Harvest21	ABC00102	679	3e-25	615 - 674	100	60 / 60	plus	ABC00102
Harvest35	U35_37854	703	3e-25	203 - 262	100	60 / 60	minus
Harvest35	U35_14070	761	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_14031	679	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_14031 679 Hv_44K_v2
CGCCTTTCCGCATCGACTTTGGTCGCCCTCCGATTCAAACCTCCCCCCCCAATCCGCACC
AGTCGCCATGGCCCGTACCAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCGCCCCG
CAAGCAGCTCGCCACCAAGGTCCGTCCCGTCTCCTCTCCCCTCCCTTATCCTTCCCCTCT
TTTGATTTCGATACGTTCGTCGTCGGGAGTTGTTGACTGACGCTTCGGATTCGTTTCATC
GTTGTGTTTTCAGGCGGCGAGGAAGTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCTCA
CCGCTACAGGCCCGGGACCGTGGCCCTCCGCGAGATCCGCAAGTACCAGAAGAGCACGGA
GCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGAGGGAGATCGCGCAGGACTTCAA
GACCGACCTCAGGTTCCAGTCCCACGCCGTGCTGGCCCTCCAGGAGGCTGCCGAGGCGTA
CCTTGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCAT
CATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGCGAGAGGGCGTAAGCCATCCT
CTCCGTCGACGCCGTTAGTGGACCGGAATGCGCTTCCGGTCGTAGTTGGTTACCGATTCC
CGTGCTAGGTCTCTCTGCT

Homology of Contig U35_14031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04030.1	137	4e-76	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi5g11920.3	137	2e-76
Arabidopsis v10	AT4G40030.2	164	7e-77	Histone superfamily protein \| chr4:18555840-18556827 REVERSE LENGTH=164