- Probe CUST_1695_PI390587928
- Source Contig U35_14036
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1695_PI390587928 | Hv_44K_v2 | CCATCGAATGTTCAAATCTCTGGTTTGATAAATGGAGTCACGCATCTTTTATGCTAAAAA | 574 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.138 | 1.380 | 1.095 | 0.928 | 0.412 | 0.362 |
| Raw | 13969.533 | 27582.953 | 18566.133 | 25327.953 | 3817.327 | 3711.093 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55741.1 | 442 | 2e-23 | 209 - 266 | 100 | 58 / 58 | plus | ABC00130 ABC00338 ABC00701 |
| MLOC | AK374251 | 641 | 9e-22 | 587 - 641 | 100 | 55 / 55 | plus | ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00126 ABC00130 ABC00135 ABC00136 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32001 ABC32138 ABC47839 |
| JLOC1 | JLOC1_35989.1 | 436 | 1e-23 | 209 - 266 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC00130 | 646 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus | ABC00130 |
| Harvest35 | U35_14036 | 647 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus |
Contig Sequence (647 bp)
>U35_14036 647 Hv_44K_v2 GCTCAATCCCAATCTCCAAGCAGCACCAGCAGCGCACCTCCCCTCGCCGGCGACCACCCC AGCCCCGATGGCCCGCACGAAGCAGACGGCCCGCAAGTCCACCGGCGGCAAGGCGCCGAG GAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAA GCCCCACCGCTTCCGCCCGGGGACCGTCGCCCTCCGCGAGATCCGCAAGTACCAGAAGAG CACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGGGAGATCGCCCAGGA CTTCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGA GGCATACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGT CACCATCATGCCCAAGGACATCCAGCTCGCACGCCGCATCCGCGGGGAGCGCGCCTAGGA TGCGCATGCACCCTGTCCCTGTCCGATGCGCTTGGTTGCTAGTAGCTGCTTATGACTCTG TAGTTGTTTGCCCTCCTTGTATGTCGTGTGGATGCCATCGAATGTTCAAATCTCTGGTTT GATAAATGGAGTCACGCATCTTTTATGCTAAAAAAAAAAAAAAAAAA
Homology of Contig U35_14036 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g05730.1 | 137 | 6e-89 | protein|histone H3, putative, expressed |
| Brachypodium v1_2 | Bradi4g07840.1 | 137 | 9e-90 | |
| Arabidopsis v10 | AT5G65360.1 | 136 | 3e-89 | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136 |