barSeed - Barley Seed Development Database

Probe CUST_16945_PI390587928

Source Contig U35_3688

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16945_PI390587928	Hv_44K_v2	GTCTGGTCAAAATGCTGATATGAAAGTTTGGTAATGAGGAATAATAGAGAGATATTGTGG	1308	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61924.1	1482	2e-23	10 - 67	100	58 / 58	minus	ABC02384 ABC08979 ABC11338
JLOC1	JLOC1_40494.1	1472	1e-23	1398 - 1455	100	58 / 58	plus
Harvest21	ABC08979	1384	1e-23	1306 - 1362	100	57 / 57	plus	ABC08979
Harvest35	U35_3688	1385	3e-25	1309 - 1368	100	60 / 60	plus

Contig Sequence (1385 bp)

>U35_3688 1385 Hv_44K_v2
GTCCCCTGAACCGAAATCCCGATTCCCGTTCTCTCCGGAACCTCCCGCGCCGGCGATGGC
GACGTCGTCGCCGCCCCGCGTGTGCGTCACCGGCGGCAACGGCTTCATAGGCTCGTGCCT
CGTCAAGCTGCTCCTCTCCCGCGGCTACGCCGTCCACGCCACCGTCCGCGACCCACGTGA
CCCGAAGAACGCGTTCCTGACGGAGCTGGACGGAGCCCCGGCGAACCTGCGGCTGTTCAA
GGCGGACGTGCTCGACTACGACACCGTGACGGCCGCCTTCGCCGGCTGCGAGGGCGTCTT
CCATGTCGCCACTCCGGTGCCCGACAAAAAGATGGTTGATCCACAGAAAGAGATGATGGA
ACCTGCTGTCAAGGGCACCATGAATGTGCTCAAGGCTTGCTCGGCTACGAAAGTTCATAA
ACTCATCGTGGTCTCGTCCATCGCCACTAGTTGCTTCAACCCGGATTGGCCTCGAGATAA
AATCAAAGATGAGAGCTGCTGGTCAGACAAGGAGCTCTGCAAACAGACTGAGAACTGGTA
TTCTCTTGCAAAGACTGAAGCCGAGGAGATGGCCCTGGAATACGGAGAGAAGAACGGGTT
GCACGTCGTCACATTTTGCCCTGGTCTGGTTTTAGGCCCTCTGTTGCAGCATGTGGCGGT
CAATACCAGCAGCAAGGTCCTCGTCTACATGATAAAAGGAGGCCCTGACACGATGAACAA
CAAGTTCTTTCCCATAGTAGACGTTCGCGATGTTGCCGATGCGTTGCTCCTGTTGTACAA
CAAGGCAGGGCCATCTGAGAGATACATATGCTCACTGGAGCAAATGGACCTAAAGGATCT
GCTGGCAATCATGAAGAGCATGTACCCTAATTACAGTTATGTAGACAAGATGGTTGATGT
GGATTTCAACGTTGGAGTCACTTCGGAAAAGCTGAAGAATCTAGGGTGGAAACCAAGGAA
GATCGAGGAGACACTCGCGGATAGTATCGAGTCCTACAAAAAAGCAGGGCTTCTTGGGGT
TTCAGATGACGAACCATGCCGGCTTCCATTCATCTACCGAATGCCGCCTATCCAGGAATG
AGAATGATCCCATTATTGTGCCATTAATATTGCATTTGGCCTGAAACATCGTGAAATGTG
TTTCACAAAAATAAGCAAGGTTTAGGTATCTATTTCTTGACTCCTCCACTAGTCCATTCA
GGATGGATGCAAATGCAAATGTTGTGCATTTGTGCTCACTTTCCTCCAGAGAAGGCAAAC
TCGGGAGGAGTACTCTCAAAGCAATGATTCCAGTTTTGTGAACATACCGTCTGGTCAAAA
TGCTGATATGAAAGTTTGGTAATGAGGAATAATAGAGAGATATTGTGGAAAAAAAAAAAA
AAAAA

Homology of Contig U35_3688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31490.1	344	2e-169	protein\|reductase, putative, expressed
Brachypodium v1_2	Bradi4g33894.1	340	5e-180
Arabidopsis v10	AT2G33590.1	321	5e-101	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:14224622-14226365 FORWARD LENGTH=321