barSeed - Barley Seed Development Database

Probe CUST_16827_PI390587928

Source Contig U35_47347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16827_PI390587928	Hv_44K_v2	CCTCTTCAATTTGTAATGTTGGTTTGATCGAGCAATGTTAATTCTTTTGTCCGTCGAAAA	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365135	1108	7e-23	1050 - 1106	100	57 / 57	plus	ABC07773 ABC14145 ABC29753 ABC48320
MLOC	MLOC_23755.1	764	7e-23	256 - 312	100	57 / 57	minus	ABC14145 ABC29753 ABC48320
MLOC	AK369235	1176	9e-22	1122 - 1176	100	55 / 55	plus	ABC14145 ABC29753 ABC48320
JLOC1	JLOC1_16391.1	708	4e-23	208 - 264	100	57 / 57	minus
Harvest21	ABC48320	497	3e-25	14 - 73	100	60 / 60	minus	ABC48320
Harvest21	ABC29753	372	6e-22	204 - 260	98	56 / 57	plus	ABC29753
Harvest35	U35_47347	497	3e-25	14 - 73	100	60 / 60	minus
Harvest35	U35_6154	1284	1e-23	1116 - 1172	100	57 / 57	plus

Contig Sequence (497 bp)

>U35_47347 497 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGACGGACAAAAGAATTAACATTGCTCGATCAAACCAACATTA
CAAATTGAAGAGGAGTTAAGAACATCACGGAAGCAGCACGAATCCTTTGCTGCTACCCGC
AAGAACTGCTCTCCTAATCGGCCAGTAACCATTTTTTTCTTGCTTCGGCGTCAGTTCCTC
CAGAACGGGAAGGGCACCTTCACGTCGCACGACCTGGACACCACCTTGGCGCTGGCGGCG
AGCCTGTCCACCGCCATGGCGCACCGCACCGTCACCGGCAGGGCCCACGTCCTCACGCCG
CCGAGCTGCAGCCGCACGGGCACGGCGATGTCCACGTCGAACGGCACCGACTTGAGCCGC
TCCGCCGCGGNCATCTGCCCACGCTCGCGCTCCGAGAACCGTATCCCGGCGCCCTTGGCC
CTCGCCACGAACACCGTCACGTTCCCGGGCGCCTGGAAGAAGGCCGGTCACGCGCCGTCC
GCCAGGCTCACGCCCTC

Homology of Contig U35_47347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None