barSeed - Barley Seed Development Database

Probe CUST_16739_PI390587928

Source Contig U35_47510

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16739_PI390587928	Hv_44K_v2	GCGGCGCCGTCGAGCCCGGCGTGCGCCAGGAGTACGGCGACATGGAGGTGGCCATCACCG	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358814	3387	7e-23	424 - 483	98	59 / 60	plus	ABC08262 ABC08885 ABC08886 ABC18116 ABC23510
MLOC	AK369334	2004	7e-23	424 - 483	98	59 / 60	plus	ABC08885 ABC08886
MLOC	MLOC_34318.1	1564	7e-23	366 - 425	98	59 / 60	plus	ABC08885 ABC08886
JLOC1	JLOC1_22115.1	1541	4e-23	360 - 419	98	59 / 60	plus
Harvest21	ABC48633	457	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_47510	457	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (457 bp)

>U35_47510 457 Hv_44K_v2
GCCCATTCGCACCCCAAACCCCAAAACCCTACCCCCCACCCCCTCCCCGCCGCCGCCGCC
GCCGCCATGGGCTCCGCCTCGGCCGCCTCGCTCCCGACCTCGGCGGGCGCGGGCGAGAAC
CTGGTCCTCATCCTCGACTTCGGGTCCCAGTACACCCACCTCATCACCCGCCGCGTCCGG
CAGCTGGGGGTCCTCTCCCTCTGCGTCTCCGGCACGGCGCCGCTCTCCTCCCTCGCCGGG
CTGCGGCCCCGCGCCGTCGTGCTCTCCGGCGGGCCCCACTCGGTCCACGCCCCCGGGGCG
CCCTCCTTCCCCGACGGCTTCCTCGGGTTCGCCGCCGCCGCCGGCGCGCACGTCCTCGGC
GTCTGGTACGGGATGCAGCTCCTCGTCCAGACCCTCGGCGGCGCCGTCGAGCCCGGCGTG
CGCCAGGAGTACGGCGACATGGAGGTGGCCATCACCG

Homology of Contig U35_47510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23730.1	545	9e-53	protein\|class I glutamine amidotransferase, putative, expressed
Brachypodium v1_2	Bradi3g20590.1	543	1e-57
Arabidopsis v10	None