barSeed - Barley Seed Development Database

Probe CUST_16520_PI390587928

Source Contig U35_263

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16520_PI390587928	Hv_44K_v2	CTATCATGGATGTAATGTCATAGTACTGTAGAACGTCATGGAGCTATAACTGTAATTCAT	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369363	820	2e-24	602 - 661	100	60 / 60	plus	ABC04556 ABC04557 ABC04559 ABC04560 ABC09911 ABC16638 ABC38793
Harvest21	ABC04557	753	3e-25	562 - 621	100	60 / 60	plus	ABC04557
Harvest35	U35_263	766	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_263 766 Hv_44K_v2
GCTCTCTCCCTCCACCAGCGATCCCATCTCGCCGCCCACCCGCCCGGAGAACCGCCGCTC
CCATCTCGCCGCCGCCCGCGTGGAGAACCGCCGCCGCGGACGAGCCGGAGGCATGAGGAA
GTCCAAGGCGGCTGCTGCGGCGGCGAAGCAGCCGCACCACGCGGCGCAGAACGGCCACGC
CCTCCCGTCCAGGCTCGCCCGGTACCTCGACCCCGACGCGTCCTTGGACAAGGACCAGCT
GCTGGACGCGGTGCACTGGATCCGGCAGGCGGTGGGGCTCGCCTGCGGCCTGCTCTGGGG
CGCCGTCCCCCTCGTCGGCGCCTTCTGGATCGCCCTATTCTTTACTATTTCCACCGTAAT
AGTTCATTTGTACTATGCACATCTGCTGAAGATTGATGAGGAAGACTTTGGAGGCCATGC
CGCCCTACTTCAGGAGGGGCTCTTTGCCTCGTTCACCCTTTTCCTGCTTTCATGGACTCT
AGTATACAGCTTGGCTCACTTCTGAGAAGCCCGACTGCAGAACTATGATGCTGGATTTTC
GTAGTTCATTTCATTCACTCTTTTGTACAATTAGCTATCATGGATGTAATGTCATAGTAC
TGTAGAACGTCATGGAGCTATAACTGTAATTCATATAGAATGCCTTCCACTTGTTGGGTC
CATTCGGTCAAGCTCAAAGCAATATCATCTCCATCATTGTTTCATGTAAATGTTAAATCT
CGCCAATTTGAACATATAGTTCCACTCACATTTGTTAAAAAAAAAA

Homology of Contig U35_263 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01994.1	128	2e-61	protein\|rab5-interacting protein like, putative, expressed
Brachypodium v1_2	Bradi2g62160.1	131	4e-77
Arabidopsis v10	AT5G59410.1	130	7e-53	Rab5-interacting family protein \| chr5:23959761-23960730 REVERSE LENGTH=130