barSeed - Barley Seed Development Database

Probe CUST_16460_PI390587928

Source Contig U35_5179

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16460_PI390587928	Hv_44K_v2	TTTTACCTTACATGTACATATATTGGCCTTTGACCCTTTATGAAAGGCAGTTGCTAATTC	950	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356929	1775	7e-23	1653 - 1712	98	59 / 60	plus	ABC13498 ABC13499
MLOC	MLOC_66402.1	1020	7e-23	98 - 157	98	59 / 60	minus	ABC13498 ABC13499
MLOC	MLOC_66402.2	1118	7e-23	98 - 157	98	59 / 60	minus	ABC13498 ABC13499
JLOC1	JLOC1_43751.1	1113	4e-23	874 - 933	98	59 / 60	plus
Harvest35	U35_5179	1010	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1010 bp)

>U35_5179 1010 Hv_44K_v2
GAAATAATTCCGAAAGATAACCATTCTTCAAACATTTTGCAGACAGAACAAAAGGTCCAT
TGCTAAACTGGTCTAAGCGATTCAAGATAATTACAGGGTTAACCGAGGGAATTGTTTACC
TGCATAAGCACTCCATGTTCTGGCTTGTCCACAGAGATTTGAAACCACATAATGTCCTCT
TGGATTGTAACATGATCCCAAAGATTGCTGATTTTGGATCAGCTAGAGCACTGAGTTCAG
ACGTAGCAGAAGAGCGTACGAGTAGAGTGGTGGGAACCAGGTATGAGCTGCCTGTTATAT
CAATCCAAAGTTTAGATGTTCTAATCTCACAATTTCGATATCTTTTGTTTGACTTTTCAG
TGGTTACAAAGCTCCGGAGTATGCATCTCGAGGAGTTTACTCGATGAAGACAGATGTGTT
CAGCTTTGGCGTCTTGGTTCTGGTGATTATTAGTGGACGGAAGAATACCATACTCGACAA
GCTAGGGGATACTGTTGGTGATCTTGTACGCGACGCCTGGCATATGTGGAAGGACCAAAG
GTTGCATGAGCTCGTCGATCCGTCTCTAGGGAACGAATATGAAATCGCTGAGATAAAGCG
ATGTGCTCAGGTGGCACTGCTTTGTGCCCAGGAAGATCCAGCAGATCGGCCCACCATGAC
CGATGTTGCTGCCATGCTGAACTCTGAAAGCATGAGCTTCTCAATGGAGCCTAAGCAGCC
TACAGTGCTGAGCAAAGGAAGTGACCGTGAAAGCACGGCATCTACATTTATGGGCCAATC
AAGCAGGACAATAGACATAACCATCACGAGCTCAACTCCCATATCGACTAGAGTTCGAAT
CATTCTGGACCCGGAGGTTTGATATGAAGAAAATAATTCAATGGTAATAAGTGTTAGATG
TGTACAGTCCCCGTTTTGATATATCTCCATTGTGTAAGGGGTTTTCTGCATTTTACCTTA
CATGTACATATATTGGCCTTTGACCCTTTATGAAAGGCAGTTGCTAATTC

Homology of Contig U35_5179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g30510.1	688	2e-51	protein\|TKL_IRAK_DUF26-la.3 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g33457.2	611	2e-70
Arabidopsis v10	None