barSeed - Barley Seed Development Database

Probe CUST_16362_PI390587928

Source Contig U35_39595

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16362_PI390587928	Hv_44K_v2	GGGTTATGATGATAGAAATATATTGACCCTGGTGTGATAAAGAATTTACAGGTTTGACTG	345	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369280	2964	3e-21	2570 - 2629	97	58 / 60	plus	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC40523 ABC49794
Harvest21	ABC35775	648	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_39595	648	3e-25	346 - 405	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_39595 648 Hv_44K_v2
GCTTTCATGTAAATCCAAACTATTATAGATACTGAAATTAATTGGACATTTATTTAAGCC
ATTTAACAAAGCGGAGCTGCATTTGCTAGGGTTCGCAGGTCATGAGATGGGGTAAACTAA
CTTGTAATAAGGCGTCTAGAGAAGTGCATGAGGTGCGGTTCGCCTTAGGCTCCTCCCACT
CGTCGACGGTCTGGTCCAGCGTCACTTAACCATTGTGACCTGGCCGGTTTGGTTCAGCTT
TGAGCTGCCCACCGCGGAGTGGGAGGACGGCATGCTCATGAAAATCGAGGTCGGATCAAG
TATGATGGTGCACCGCGGCATGTGGTGGCCTATTTTTTTTGTAGTGGGTTATGATGATAG
AAATATATTGACCCTGGTGTGATAAAGAATTTACAGGTTTGACTGAATTGTGAAGAGGAA
TGGTGATTCGTTGCTGGTGCAGAGTCAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTCTC
CTTCCTCGCGCAGCCTGAAGGCTCATTCCTGCTGTTGCTCATAGGTAATTCAGTTCTGAT
GCATCTGTTCTAATACTTTTATGGAGTTATATATAGGGGCTGCTGATTGTGTGCGTTTAC
TAGTTAGATTTTGTTTGCAATCAAGGGTGAACACTATGATCGTAGTAT

Homology of Contig U35_39595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None