barSeed - Barley Seed Development Database

Probe CUST_16161_PI390587928

Source Contig U35_41868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16161_PI390587928	Hv_44K_v2	ATATATGCAGACCACTATAAATGGGCCTTGGATGAGCTATTCATTAAGCATGATTTTCGC	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19196.9	1293	2e-24	192 - 251	100	60 / 60	plus	ABC15789 ABC18549 ABC19664
Harvest21	ABC37133	598	3e-25	516 - 575	100	60 / 60	plus
Harvest21	ABC47325	469	1e-23	334 - 393	98	59 / 60	plus
Harvest21	ABC34819	633	8e-21	576 - 627	100	52 / 52	plus
Harvest35	U35_41868	598	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_46784	469	1e-23	334 - 393	98	59 / 60	plus
Harvest35	U35_22707	855	8e-21	560 - 611	100	52 / 52	plus
Harvest35	U35_9707	766	8e-21	535 - 586	100	52 / 52	plus

Contig Sequence (598 bp)

>U35_41868 598 Hv_44K_v2
GTAAACCCCCTCCCTCCCTCCTTTGCTCTGCTCTCTCCGGCTCTCCGCGTATCAGATCCA
TTCCGCTCAGCCAGTCGCCGGCCGGGGATCTGACCGCCTCCACCCTCATCTCCTCCACCC
GAAAATCAGATTAGCGGAGTAGATTTCCCCTTGATTCGGTCTCCCCTTTCTGTTCAGGTG
CGGCTCTTCTCTACCCAGTCTCATGACGCCGGACGCCTCGCCCTCGCCGGAGCAGATCAA
CCTGATCTCCCCGTCGCCGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTGCAG
AGGACAGTTGAATCTATCCTCAAGTACCAGAAAGCAGTTGCTTCAAAGTTCCCACTATTT
ATATCGCAGGTAATGCGAATAGGTAATAGTAATTTCAGTTCTTGTTCTCGGTCTCTTTAT
GTGTGTGGAAGGATATTTTTACTTTGCTTCTTCCAATTGCAGGATGGAACAAATGGAGAT
GTAAAAAATAAGGCCCTGAGTTATACCCAAATAAGATATATGCAGACCACTATAAATGGG
CCTTGGATGAGCTATTCATTAAGCATGATTTTCGCCGAGTTATCATTCTGGAAGATGA

Homology of Contig U35_41868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None