barSeed - Barley Seed Development Database

Probe CUST_16114_PI390587928

Source Contig U35_41888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16114_PI390587928	Hv_44K_v2	TAAGAGAACCGTTAATTGATAATCATATGGATGATTTCGCAGAGGGCGGGGGCTAGTCCT	284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251005.1	1730	2e-24	1421 - 1480	100	60 / 60	minus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
MLOC	MLOC_59698.1	1360	7e-23	323 - 382	98	59 / 60	plus	ABC01503 ABC01506 ABC01507 ABC01508 ABC01509 ABC01510 ABC01511 ABC01512 ABC01516 ABC24152
JLOC1	JLOC1_38865.1	1353	4e-23	980 - 1039	98	59 / 60	minus
Harvest21	ABC37170	520	3e-25	285 - 344	100	60 / 60	plus
Harvest21	ABC01510	1726	1e-23	1416 - 1475	98	59 / 60	minus	ABC01510
Harvest35	U35_41888	520	3e-25	285 - 344	100	60 / 60	plus
Harvest35	U35_14333	1719	3e-25	1409 - 1468	100	60 / 60	minus

Contig Sequence (520 bp)

>U35_41888 520 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCACAAAGCATGAACTGAAATCAGACACAAGCAACTCTGAAT
TACATTTAGATTTAACACGACAATTAGACGCGGGCACCAGATAAACAGACACTACAATTG
GAGTAGAACGCAACAGGGCGTTGCACACCGCCATTGTGCAAGATGTTTACACCAATCTAT
CTCAATCTCATCAGCAACCACCCTTCCATGAGTTTTCTGCTCCTCAACAACAGCACTCAC
TAAGAAAGACACAACACTTCTACAGAACCATAATCAAATTAACATAAGAGAACCGTTAAT
TGATAATCATATGGATGATTTCGCAGAGGGCGGGGGCTAGTCCTGGAGGTCGGCGTCGTC
CTCCTCGTCCTCGTACTCGCCCTCCTCGTCGGCGGTGGCGTCCTGGTACTGCTGGTACTC
GGACACCAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATGCCCTC
ACCCGTGTACCAGTGCAGGAAGGCCTTGCGCCGGAACATG

Homology of Contig U35_41888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None