barSeed - Barley Seed Development Database

Probe CUST_1545_PI390587928

Source Contig U35_42215

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1545_PI390587928	Hv_44K_v2	CTAGTTGTCATGTCAAATCTGTTGCAAGTTTTGGTGGAGCTGGCTACAAAGTCTTGGAGA	83	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.718	2.740	2.472	3.268	2.871	2.889

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4763.2	2994	2e-23	832 - 889	100	58 / 58	plus	ABC09600 ABC09601 ABC15584 ABC37733
MLOC	MLOC_4763.1	2951	2e-23	2200 - 2257	100	58 / 58	minus	ABC09600 ABC09601 ABC15584 ABC37733
JLOC1	JLOC1_3011.1	920	1e-23	695 - 752	100	58 / 58	plus
Harvest21	ABC37732	637	3e-25	84 - 143	100	60 / 60	plus
Harvest35	U35_42215	637	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_42215 637 Hv_44K_v2
GGTTGCCCACTATCAAGGCTCGTTCTCAGTCCTTTGTAGACAGGTAAAAGGAGCTTTGGA
AAGCATGGGATGTCGAATTAAAACTAGTTGTCATGTCAAATCTGTTGCAAGTTTTGGTGG
AGCTGGCTACAAAGTCTTGGAGAATGATGGTTCAGAGGAAACATACGACAATGTCATCCT
TGGCATTCATGCACCTAATGCTCTCAAAGTACTAGGAGCTGAAGCTACAGATTACGAACT
AAAAATTCTAGGTGCTTGTCAGTATGTCCACAGGGATACATACCTCCACCGCGATCAAAA
TTTGATGCCCCGAAATTCTTCGGCATGGAGCGCCTGGAATTTCCTGGGGACAACTACGAG
TGGTTTTTCTATTACTTACTGGCTAAATCATATTCAGAAAATTGAATCTGTCAAGCCTTT
CCTTGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTGCTTAAATGGTCTACAAG
CCTTCCTGTTCTGTCTGTGGCTGCGGCGAAGGCTTACCTTCAGCTTGATCAGATCCAGGG
AAAGAGAGGAATATGGTTCTGCGGGGCATATCAAAGTCACGGCTTCCATGAAGACGGATT
GAAGGCTGGAAAAGTAGTAGCCCAAGGTTTGCTTGGA

Homology of Contig U35_42215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g16650.2	795	6e-77	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795	4e-95
Arabidopsis v10	AT3G23510.1	867	2e-71	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8428071-8433159 FORWARD LENGTH=867