barSeed - Barley Seed Development Database

Probe CUST_15317_PI390587928

Source Contig U35_8711

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15317_PI390587928	Hv_44K_v2	GAGCAATGCTTGTGTGATGAAGCTTACTCGCGCAACCTATTCACATATGTACTGTAGCTG	469	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46057.1	201	7e-23	125 - 184	98	59 / 60	plus	ABC16799 ABC33341
MLOC	MLOC_739.1	166	7e-23	30 - 89	98	59 / 60	minus	ABC16799
MLOC	MLOC_3134.1	186	3e-21	25 - 81	98	56 / 57	minus	ABC16799
Harvest21	ABC16799	790	3e-25	413 - 472	100	60 / 60	plus	ABC16799
Harvest35	U35_8711	847	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (847 bp)

>U35_8711 847 Hv_44K_v2
GCGTACAAGCTTAGCCGCTCCGCCGCTTACCTTATTCCGGCTAGATCCGGCGGCCATGCC
CTGCGCGCAGCCAACTGCAGATCTCACCTAGCCCTGCATCGTCGATCCCTCCATCCATAT
CCATCCCTCCCTGCCTCCAATGCCGTGGGATAAATTTTTAGTATGCTCGCACTCCAGGAC
GCCATGGAGGACGCAGCTCCACCACTACCCCGACGCTATCTAGGAGCATCCCAGATTCGG
TCCATCCAAGCTCCCCGCCGCCTTGGTCTCCGCGAGGGCTGGATCTTGGCCATCGAAGAG
GGAGGGATCGAAGAAGAAGATTGCTCTGCTCGGCTGCTGCTGTTGCGATGATTGGGATGA
ATCCACGTGAAAGCAACCTGGTATTCTATCGTCAGCCAACTACATGAGTAACATTGATTA
TTTAGCTGACTACACAAGTAATTTACTTTTTCTCATCTTATGATGCTCGGAGCAATGCTT
GTGTGATGAAGCTTACTCGCGCAACCTATTCACATATGTACTGTAGCTGTTGAAGCAAAA
GTTATCTGCACAGACGGCAATGGCAAGAGCATATTGTGCGGAGAAAGAGGATGAGAAGAA
ACTTGTGGTTCTCATCCCATCTTTGTGGAACTCTCTTTTTGTGCGATTGTGCACTTGTTG
GGTCCTTTTTCTGTGCACTTGCACTTGTAGAAGTATTCTGTTGTGCACATGTAAAATTAT
GTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGTGGAGTCGGTGGATGATGTAATG
TATTTGATCTGATATGCTACTGAAATGAAATATATATTCTATTTGCAATCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_8711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None