barSeed - Barley Seed Development Database

Probe CUST_15036_PI390587928

Source Contig U35_18765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15036_PI390587928	Hv_44K_v2	TGCTACGAGCGGCGATATGAGCAAAGTGTCTTCAAAGACCGAAATATATTGGTTTTCCTG	997	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70103.1	1355	2e-24	1258 - 1317	100	60 / 60	plus	ABC12471
MLOC	MLOC_70104.1	3295	2e-24	1255 - 1314	100	60 / 60	plus	ABC04674 ABC04676 ABC04677 ABC12471 ABC15844
MLOC	AK358360	1060	2e-23	1001 - 1058	100	58 / 58	plus	ABC12471
JLOC1	JLOC1_46505.1	1324	8e-25	1258 - 1317	100	60 / 60	plus
Harvest21	ABC12471	536	3e-25	460 - 519	100	60 / 60	plus	ABC12471
Harvest35	U35_18765	1089	3e-25	998 - 1057	100	60 / 60	plus

Contig Sequence (1089 bp)

>U35_18765 1089 Hv_44K_v2
GTGCGAGCGCTAGCTAGACACACGGCACAAACACTAGCTACCTAGCTAGCTTGAGATCGA
CCGGGCTTGCTTGGCTGTGCTCGGCTCGAGCGCGACGATGGACGCGGCGCAGGCGGGGAG
GGGGAGGGGGAGGGGGAGGAGGCCGTCGGAGGTGAGGGCGGAGGGGCTGATGCGGGGCGC
GTGCGCGGCGCTGGCGGCGGCGTCGGCGCTGCTGATGGGGCTGGACACGGAGACGGAGAC
GGTGCTGCTCATCAGGAAGAAGGCCACCGTCAAGGACGTCCACGCCCTCTGGGTTCTGAC
GGCGGCGGCCGGCGCGGCGGCGGGGTACCACCTGCTGCACCTGCTCCGGTGCCTCTACCT
CGGCCGCTTCGCCCACAACCCCTGCCGCAACAGCAGGGCCCTAGCCTGGGCGTTCCTCCT
CCTCGACAAGGGTTGCGCGTACCTGACGTTCGCGGCGACGGTGGCGGCGGCGCAGGCGTG
CCTGATCGCGCTGGACGGCGCGCAGGCGCTGCAGTGGAATAAGCTCTGCAACATCTTCAC
CCGCTTCTGCCAGCAGGTCGCCGGGAGCCTCGTCTGCGGCGGGCTCGCCGCCGTCGGCAC
CGCCGTCCTCTCCGCGCTCTCCGCCCGCAACCTCTTCCGCCTCTACCCCTCCCTCTGCTC
CCACCCTCACCGCTCCTCCTCCACCACAAAGTAGCCGGCCCGGCCCATGAACTCCACCCA
GTACCAGGGTGGTGGTGGGCTCCCGATGATCGATCACCAGCAGCTAGCCTTTAGGAGACG
CTCGGCCCGACTACGCCCAAGTGGACTCCTTGGGCTTTTCTTCCATTTCGTTGTGTCACT
ACTAGTGTGAGAAGGCATTAGACATGACTGTGTGTGTGTGTGCTGCAGTAGTGTGTTCCT
CCAGAAAAATATGTATCAGTGTGCTTGTGTAGTTGTATCTTATATGTATGTACTCTCTGT
GTAATGTTCATGGACCATGCACCCTCTTCTCTGCTGGTGCTACGAGCGGCGATATGAGCA
AAGTGTCTTCAAAGACCGAAATATATTGGTTTTCCTGAAAAAAAAAAAACCACAAAAAAA
AAAAAAAAA

Homology of Contig U35_18765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None