- Probe CUST_14928_PI390587928
- Source Contig U35_49033
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14928_PI390587928 | Hv_44K_v2 | GAGTCCGCATCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCGCTATATATA | 0 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.849 | 5.121 | 1.215 | 0.891 | 0.264 | 0.365 |
| Raw | 976.500 | 1221.570 | 237.100 | 295.298 | 29.438 | 44.468 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_30357.2 | 797 | 6e-21 | 496 - 554 | 97 | 57 / 59 | plus | |
| JLOC1 | JLOC1_30357.1 | 844 | 6e-21 | 543 - 601 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC50988 | 500 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC50900 | 630 | 2e-21 | 1 - 59 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC50402 | 624 | 2e-21 | 1 - 59 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC49790 | 709 | 2e-21 | 37 - 95 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC01020 | 462 | 2e-21 | 310 - 368 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC01017 | 1129 | 2e-21 | 954 - 1012 | 97 | 57 / 59 | plus | ABC01017 |
| Harvest21 | ABC01016 | 1083 | 2e-21 | 896 - 954 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC01015 | 1878 | 2e-21 | 1662 - 1720 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC01014 | 1162 | 2e-21 | 161 - 219 | 97 | 57 / 59 | minus | |
| Harvest21 | ABC01013 | 1661 | 2e-21 | 1541 - 1599 | 97 | 57 / 59 | plus | ABC01013 |
| Harvest35 | U35_49033 | 500 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_49000 | 630 | 2e-21 | 1 - 59 | 97 | 57 / 59 | minus | |
| Harvest35 | U35_48535 | 624 | 2e-21 | 1 - 59 | 97 | 57 / 59 | minus | |
| Harvest35 | U35_33209 | 734 | 2e-21 | 99 - 157 | 97 | 57 / 59 | minus | |
| Harvest35 | U35_13900 | 1819 | 2e-21 | 1608 - 1666 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_13899 | 1508 | 2e-21 | 1433 - 1491 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_13897 | 1162 | 2e-21 | 944 - 1002 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_13895 | 897 | 2e-21 | 721 - 779 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_13893 | 1367 | 2e-21 | 1269 - 1327 | 97 | 57 / 59 | plus |
Contig Sequence (500 bp)
>U35_49033 500 Hv_44K_v2 TATATATAGCGATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGACTC CGGTAGGTAAAACATCAGATATTAAAAGTGGCATGCTTAAAAGGTGTAAAGGCAGCTGCC GTCGTCGCTCCTTGCCGTTGGGTCGTAGTTCTTGGCATTTTGGTCGGTGCAACCTTCCGG CACGGTCTAAGTACCTTGCAGACACCGATACGGTCGTCACGGGTGGGAGCCCAGTAGAAC TTCTCCATACGACCATCACGGATCAGAGGAGCGTAGAGCGTCGAGAAATCGTTACCGGTG ACGACGATGGGCACACGGGGGTTCTCCTCCTTGTTGTACATGCCAGGGAGCTGCACGTTG GTGGGGGCATCGGCGATGTTCATCAGGGTGGCGTTCACCATCTGGTTGTTGACGGTGTAC TGCGTGGTTCCGCCCATCCTACCCGCACCAGCGTTAAGATCGTTGATGAAGAGGCATCAC ATCTTACCCTTCTTGATCAT
Homology of Contig U35_49033 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g47970.1 | 467 | 2e-62 | protein|AAA-type ATPase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g09120.2 | 441 | 7e-64 | |
| Arabidopsis v10 | AT2G39730.1 | 474 | 5e-61 | | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |