barSeed - Barley Seed Development Database

Probe CUST_14577_PI390587928

Source Contig U35_8762

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14577_PI390587928	Hv_44K_v2	ATGAGCCCCATGATCGACTTCCTCGAACAGACGGGCTCCTACCTCATGGCCAATATCTAC	624	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.902	0.753	0.758	0.767	1.307	1.109
Raw	3.260	3.273	4.483	7.176	4.307	3.358

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361492	1854	2e-24	602 - 661	100	60 / 60	plus	ABC08262 ABC18116 ABC23510
MLOC	MLOC_56460.2	1390	2e-24	678 - 737	100	60 / 60	plus	ABC18116
MLOC	MLOC_56460.1	1299	2e-24	627 - 686	100	60 / 60	plus	ABC18116
JLOC1	JLOC1_36517.1	1315	8e-25	603 - 662	100	60 / 60	plus
Harvest21	ABC19626	715	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_8762	764	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_8762 764 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCCCATCCTTCGCCTCCTCATACTCTGCCCTCTCCACAAT
CCACTTTAGCAAAGCATGGCACTCACTCGCCTCCTCCTTGTCCTCCTCTGCGCGGCATTG
CCTATGCTCTTCTTCTCCCGTGCAGAGGCAGGCGAGGTGGGTGTGAGCTACGGGAGGATC
GGGAACAACCTGATGGACCCAGCGTCGGTGGTGCAGCTGCTGAAGCGCAATGGCATCACG
ATGGTGAGGGTGTACGACACCGACTCCACGGTGCTCACCGCAATGAAGAACACCGGCATC
AAGGTGGTGGTGGCGGTGCCCAACGAGAATGTCGCCATTGCGGCCGCGGATCCCAACTGG
GCTGTACAGTGGGCCAAGAACAATTTGGTGCCCTATTACCCTGCCACGGACATCCGCGGC
GTGACGGTAGGGAACGAGGTCTTCAACCAGGCAAAGGGGCTCACGTCGCAGCTCCTCCCG
GCCATGAAGAACGTGCAGGCGGCGCTGACTGGCCTCGGCCTCTCCAACGCCATGAAGGTG
ACCACGCCGATCGCGTTCAATGCGCTCAAGAAATCGTTCCCGCCATCCGAGAGCTTGTTC
CAGGACGACATCGCCCAGTCGGTGATGAGCCCCATGATCGACTTCCTCGAACAGACGGGC
TCCTACCTCATGGCCAATATCTACCCCTACTACACGTACACGTCCCAACCAGACACAATC
AACCTCAACTACGCGACGTTCCGCCCGAACGACGGCGTCGTCGA

Homology of Contig U35_8762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35350.3	456	1e-84	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25517.1	563	1e-108
Arabidopsis v10	AT5G55180.2	465	9e-67	O-Glycosyl hydrolases family 17 protein \| chr5:22388834-22390561 FORWARD LENGTH=465