barSeed - Barley Seed Development Database

Probe CUST_14551_PI390587928

Source Contig U35_8792

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14551_PI390587928	Hv_44K_v2	AAATGATTGTACATGTGGTTTGTTGGGCTTTGCCCCTTATAAATGCTGGGAATTTACAGA	1765	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4544.3	1921	9e-22	1839 - 1896	98	57 / 58	plus	ABC01373 ABC01380 ABC17092
Harvest21	ABC17092	1825	3e-25	1766 - 1825	100	60 / 60	plus	ABC17092
Harvest35	U35_8792	1825	3e-25	1766 - 1825	100	60 / 60	plus

Contig Sequence (1825 bp)

>U35_8792 1825 Hv_44K_v2
GCACACACACACACACATCCGACTACAAGCCAGGCAGCTAGGGGAGGGGAGAGCAGTGAG
CGGCGGCGGCCATGGTGATCTCGCACTCGAGCTCCGGCGCCGGCGAGTCCGCGTACAACA
CCTTCTCGTCGCGCTACGCCCGCGTGGAGCTCCCGAGGTACCGGATGCCGGAGAAGTCGG
TCCCCAAGGAGACGGCGTACCAGATGATCACCGACGAGCTGATGCTGGACGGCAACCCGC
GGCTGGACCTGGCATCCTTCGTCACCACGTGGATGGAGCCCGAGTGCGACAGGCTCATCA
TGGACTCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCC
AGAACCGTTGTGTCAATATGATTGCTCACTTATTCAATGCACCAATAAATGAGGATGAGA
AAGCTATTGGAGTTTCAACAGTGGGATCCTCGGAGGCAATAATGCTTGCCGGCCTGGCGT
TTAAGAGGAAGTGGGCAAACAAAAGGAAGGAGCAGGGGAAGCCATATGACAAACCTAACA
TTGTCACTGGTGCAAATGTTCAGGTGTGCTGGGAAAAGTTTGCTAGATATTTCGAAGTAG
AACTAAAGGAGGTCAAGTTAACTGAAGGATACTATGTTATGAATCCTTCGAAGGCTGTTG
AAATGGTGGATGAGAACACCATATGTGTTGCAGCCATCTTGGGATCTACTCTCACTGGAG
AGTATGAAGACGTTAAACTATTGAATGACCTTCTTGTGGAAAAGAATAAGGAAACAGGGT
GGAATGTGCCGATCCATGTTGATGCTGCTAGTGGAGGATTTATTGCTCCTTTTCTTCATC
CTGAGCTTGAGTGGGACTTCAGGCTACCATTGGTGAAGAGCATCAATGTTAGTGGGCACA
AGTACGGCCTTGTTTACCCTGGTGTTGGATGGGTCGTTTGGCGGAGCAAAGGCGATTTGC
CCGAAGAACTCATCTTCCATATAAACTATCTAGGGACAGATCAGCCCACATTTACATTGA
ACTTCTCCAAAGGTGCAAGCCAGATAATTGCACAATACTATCAGTTGATACGCCTTGGCT
TCCAGGGATACAAGCACATCATGGAGAATTGCCAGGCGAATGCAGCCGTGCTGAGGGAGG
GCATGGAGGCCACCGGCCGATTCAGCATCCTGTCCAAGGAGGACGGCGTGCCCCTGGTCG
CCGCCTCACTCAAAGACAGCACCAACTTTAGCGTGTTCGACGTCTCGGAGAACCTGCGGA
GATTCGGATGGATCGTGCCGGCCTATACCATGGCTCCAGACGCGGAGCACGTCGCGGTCC
TCCGTATTGTCATCAGGGAAGACTTCAGCCGGAGCCTCGCCCAGCGGCTCCTCGCGGACA
TCAATAAGGTCCTGCACGAGCTGGACGCCCATGCAGTCCATGCCATTAAGGCCACCGCGA
CACAAACTGGCAAGGGCGCCGCCGCAGACAACGGCAAGGTGACACAGAAGAGCGTCCTGG
ACACCGAAAAGGAGTTCGCTGCGGCATGCATGTCCCTGGTAAGGAAAAAGACTGGAGTCT
GCTGAAGGACATGGTCAGACGCACGCTTCAAGGTCGTTACATCTGTGGATCTATAATTAT
TTTGTACTACGTGGATTCCCCTCCCTTTCAGCATGGTCTGTGGTTGTGTACATGACCCCT
CTCGATGCAGGTTAGTATTTGTTGTTTGCTTTAGTTTTGTTTCGAAATGTTGCGTGTTTG
CTGTGCATCCTTTACTTCTGTACTGAAATGATTGTACATGTGGTTTGTTGGGCTTTGCCC
CTTATAAATGCTGGGAATTTACAGA

Homology of Contig U35_8792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g36320.3	498	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g37830.1	500
Arabidopsis v10	AT5G17330.1	502	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502