barSeed - Barley Seed Development Database

Probe CUST_14289_PI390587928

Source Contig U35_24120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14289_PI390587928	Hv_44K_v2	CGGCGGCTTCTCCCCTTCCTCTCCCTCCCGCTCCGTCACCATCGCCACCGACATCTCCTG	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375789	2239	2e-24	208 - 267	100	60 / 60	plus	ABC04810 ABC04811
MLOC	AK366843	2191	2e-24	183 - 242	100	60 / 60	plus	ABC04810 ABC04811
JLOC1	JLOC1_14830.1	624	8e-25	426 - 485	100	60 / 60	plus
Harvest35	U35_24120	918	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (918 bp)

>U35_24120 918 Hv_44K_v2
AACACCGACGAAGCCAGAGTGAAGTGGGCACTGAGAAGCGAGCAGAGGACGACACCACCG
GGCTCCGAGCAGAGCGAGGAAGGAGCAATGGGGGTCCGCTCGGCGGCCACCAAGCTGCAC
ATCCCGCCCACCCACTCCGGCGCCCGGCGCTCCTTCTTCCTGCCGCTCGCCGCCGTCGCC
CTCCTCTGCTCCGCCTCCTACCTCCTCGGCGCCTGGCACCACGGCGGCGGCTTCTCCCCT
TCCTCTCCCTCCCGCTCCGTCACCATCGCCACCGACATCTCCTGCACCACCACCCTCACC
CCCTCCACCACCACCACCACCACCACCACCACCACTCCGTCCCTCGACTTCTCCGCGCAC
CACGCGGCGGCGGTCGACGCCGTGGCGGCCAGGGCCGCGTCCTCGGCATCCTCGGCGCCG
CGGAGGTACCCGGCGTGCCCGGCCGAGTACTCGGAGTACACGCCGTGCGAGGACGTGAAG
CGGTCGCTGCGGTACCCGCGGGACCGGCTGGTGTACCGGGAGCGGCACTGCCCCTCGGGG
CGCGAGCGGCTGCGGTGCCTGGTGCCGGCGCCGGCCGGGTACCGCAACCCGTTCCCGTGG
CCGGCCAGCCGGGACGTCGCGTGGTTCGCCAACGTGCCGCACAAGGAGCTCACCGTGGAG
AAGGCGGTGCAGAACTGGATCCGCGTCGACGGGGACAAGCTCCGGTTCCCCGGCGGCGGG
ACCATGTTCCCGCACGGCGCCGACGCCTACATCGACGACATCGGGAAGCTCATCCCGCTC
CACGACGGCTCCATCCGCACCGCGCTCGACACCGGCTGCGGGGTGGCGAGCTGGGGCGCG
TACCTGCTGTCGAGGGACATCCTGGCCATGTCCTTCGCGCCACGGGATTCGCACGAGGCG
CAAGTGCAGTTCGCGCTG

Homology of Contig U35_24120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45310.1	647	7e-121	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi3g51560.1	640	1e-132
Arabidopsis v10	AT2G45750.1	631	5e-79	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:18842655-18845343 FORWARD LENGTH=631