barSeed - Barley Seed Development Database

Probe CUST_13901_PI390587928

Source Contig U35_22331

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13901_PI390587928	Hv_44K_v2	GAAAACGCGTTTGAATGTACAATCACTCGGAATAAGATGAGAAATATGTTGTTTCTCCAA	718	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359731	1263	9e-22	1204 - 1261	98	57 / 58	plus	ABC03239 ABC03241 ABC03243 ABC17982 ABC18975
Harvest21	ABC18975	783	3e-25	719 - 778	100	60 / 60	plus	ABC18975
Harvest21	ABC36498	387	8e-21	32 - 89	97	56 / 58	minus	ABC36498
Harvest35	U35_22331	793	3e-25	719 - 778	100	60 / 60	plus
Harvest35	U35_18014	595	8e-21	452 - 509	97	56 / 58	plus

Contig Sequence (793 bp)

>U35_22331 793 Hv_44K_v2
GCGAGGTCGACAGGTTCAACGCCTTCTTCCTCGAGCAGGAGGAAGACTTCATCATCCGCC
ACAGGGAAGTCAGGGAGACGGTGAAGGCGGTGGCCGGCGAGGAGCCGTCCGAGGCGGAGC
GTGCGGCGCAGATGAGGAAGGTGAGGAGGGAGATCGTGGATTTGCACGGGGAGATGGTGC
TGCTCCTCAACTACAGCGCCGTCAACTACACAGGGCTGGCCAAGATACTGAAGAAGTACG
ACAAGCGTACGGGGCGGCTGCTCCGGCTGCCCTTCATCGAGGAGGTGCTCAAGCAGCCCT
TCTACAGGACGGAGCTCATGTCCAGGCTCGTCCGCGAATGCGAGGAGACCATGGAGGCTG
TGTTCGCCTCAGACAAGAGTGGTGACTGGTGGACGAGGAAGCGCTGCACCGGCACCGAGA
TGGCTCCTATGGCAACAGCGCAGGGCATCTTTAGGAACACCGTCGCGGCGCTGGTGGCCA
TTAGGGAGCTCCGTAGCGGGAGCTCAACGTACGGGCACTTCTCGCTGCCACCATTGGAAA
CGGAGGCCGCCTTGACTGAGCAGGGCCAGCTGCTGTCCATCCAGGTTGCCGATACATGAG
TTTAAATGTTGCTATATATATATACTAGCAAAAAAACGGAAGAGAAAATAACACACGCTT
TGAACGTAATATATTAGCACATTTGTGTTGTCGACGATGGCCTCAGTGCTCACACAACGA
AAACGCGTTTGAATGTACAATCACTCGGAATAAGATGAGAAATATGTTGTTTCTCCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_22331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g25310.1	278	2e-80	protein\|SPX domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g60250.1	249	5e-65
Arabidopsis v10	AT2G45130.1	245	7e-56	\| Symbols: ATSPX3, SPX3 \| SPX domain gene 3 \| chr2:18606489-18607754 FORWARD LENGTH=245