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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13892_PI390587928Hv_44K_v2GATACTCATACATACAGCAGTACTAAATAAAGTCCATATCAGGCCGATTTGCAGTTAAAA2377GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.4422.4061.0030.8410.5220.700
Raw 270.220408.495152.104210.63241.88463.679



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_44256.524553e-222400 - 245510056 / 56plus ABC03596 ABC05239 ABC12712
JLOC1JLOC1_28665.126311e-232469 - 252610058 / 58plus
Harvest21ABC0359624783e-252378 - 243710060 / 60plusABC03596
Harvest35U35_124924513e-252378 - 243710060 / 60plus



Contig Sequence (2451 bp)

>U35_1249 2451 Hv_44K_v2
CAACCAACCAACCGCCGAAGCGGCCCACTCCGGCAAGCAACTGGCCGTGGCCTCCGGCGT
CCGATCGCCATCCGGAGCCACCCTTCCCTTCAAAGCCACTGCTTCCTCGCCGTGGCGGCT
TCGCCTACTTAAGCGCGCGCCTCCGCTGCTCCTGCACTCACTCGCAGGATCCTGACTCCG
CCTCCGTCTTCCTCAGCCGCTTGCGCTTGCTGCTGGCTGTGGGTGGGATTCATGACACAC
GGACTACATTAGTGCTCTTTACAAGATGAAGCGTATGGGTTCCAAACAAGTGTTCGTTCC
TACCATCGCATGCGTGCTGCTCCTATTCTGCTTTGGATGCAAATGCATAGCATCGGAATT
ACAAGCGACACAGACGGCCACCCTCAAGGTTGATGCCTCATCACAGCTTGCCCGAAAGAT
ACCAGACACACTGTTTGGGATGTTTTTTGAGGAGATCAACCATGCAGGAGCCGGTGGCAT
ATGGGCAGAACTTGTTAGTAATAGAGGTTTTGAAGCTGGAGGACTCCATACGCCATCAAA
TATTGACCCATGGTCTATAATTGGCGACGACTCTTCCATATTTGTGGCGACTGATCGTAC
ATCATGTTTCAGTCGAAACATTATCGCTCTTAGGATGGAGGTTCTCTGTGATGACTGCCC
AGCCAGTGGTGTTGGCATTTACAACCCTGGGTTCTGGGGCATGAACATAGAAGATGGAAA
GACCTACAATCTAGTTATGTATGTTAAATCAGCAGAAGCTGCAGAATTGACAGTTTCATT
AGCAAGCTCCGATGGGTTGCAGAATCTTGCTTCTGTTACTGTACCAGTTGCTGGCACTTC
CAACTGGACAAAAGTGGAGCAAAAATTGATTGCTAAAGGGACAAACAGAACCTCAAGACT
TCAGATAACATCTAACAAGAAGGGAGTTGTATGGTTTGATCAAGTATCACTCATGCCTTC
AGACACGTTCAAGGGACATGGTTTTCGCACCGAACTGATATCCATGCTTTTGGATCTAAA
ACCACGATTCTTGAGATTTCCTGGTGGTTGCTTCGTTGAAGGCGAATGGTTAAGAAATGC
ATTCAGGTGGAGGGAATCTATTGGTCCATGGGAAGAGAGGCCTGGACACTTCGGAGATGT
TTGGCATTACTGGACTGACGATGGCCTTGGATATTATGAGTTTCTTCAGCTTTCTGAAGA
CCTGGGGGCTGCTCCAATCTGGGTATTCAACAATGGAATCAGCCACAATGATGAAGTTAG
TACCGCTGCCATTGCCCCTTTTGTAAAGGATGTATTGGATAGTCTAGAATTTGCAAGGGG
GAGTGCAAACTCAACATGGGGCTCTGTTAGAGCTGCAATGGGGCATCCTGAACCGTTCCC
AGTCAAATATGTTGCAATCGGAAATGAAGATTGTGGGAAAAAATACTACCTCGGTAATTA
CCTCAAGTTCTACAATGCTATAAGAGAATCCTATCCAGACATTCAGATGATTTCAAATTG
TGATGGTTCATCTAAACCACTTGACCATCCTGCTGATCTGTATGACTTCCATGTCTACAC
CGATTCTAAGACATTGTTTAACATGAAGGGTACGTTTGATAAAACTTCTCGGACTGGTCC
CAAGGCCTTTGTCAGTGAGTATGCGGTATGGAGAACTGATGCAGGTAGAGGAAGCCTTCT
TGGTTCACTGGCAGAGGCTGCCTTCCTTACTGGGCTGGAGAAGAACAGTGATATTGTTCA
TATGGCAAGTTATGCACCGCTCTTTGTAAACGACAACGATCAAACGTGGAATCCAGATGC
TATCGTCTTCAACTCCTGGCAACAATACGGAACTCCTAGTTACTGGATGCAGAAGTTTTT
CCGCGAATCTAGTGGTGCCATGATTCATCCAATTACAATCAGTTCCAGCTACTCTGGTTC
TCTAGCAGCATCTGCTATCACCTGGCAGGATTCCGGGAATAACTTCCTGAGAGTAAAGAT
TGTGAACTTCGGGTCGGACACCGTGAGCCTCACAATCTCTGTGTCCGGGCTCCAGGCTAG
CATCAACGCGCTGGGGTCAAACGCTACTGTTCTCACGTCCAGCAATGTAAAGGATGAAAA
TTCTTTCAGTAACCCAACCAAGGTCGTGCCCGTGACAAGTCAGTTGCATAACGCCGCGGA
ACAGATGCAGGTCACGCTCGCTGCCCACTCCTTCTCCTCGTTCGACCTTGCGCTTGCTCA
GTCCGAGCTTGTCGCAGAGATGTGAAGCAGCGACACGGCGTTAGTGACACGTGGAAACAG
GATTAATACACGAGGCGTGATATGGAAATGGAGGAGCTTGTCAGTAATTATGCTTATATC
TTGATAAAGCACTCACTGTACAGTGTAAGAAAGAGGAGATACTCATACATACAGCAGTAC
TAAATAAAGTCCATATCAGGCCGATTTGCAGTTAAAAAAAAAAAAAAAAAA



Homology of Contig U35_1249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os11g03730.16590.0protein|alpha-N-arabinofuranosidase A, putative, expressed
Brachypodium v1_2Bradi4g26270.16590.0
Arabidopsis v10AT3G10740.16780.0| Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678