barSeed - Barley Seed Development Database

Probe CUST_13882_PI390587928

Source Contig U35_19909

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13882_PI390587928	Hv_44K_v2	ATCTGCCTCGAGAACACGCATGGAAATTCTGGTGGGAAATGTATATCTGTAGAGTACACC	677	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.715	1.532	2.415	1.325	0.357	0.301
Raw	86.960	255.292	376.838	326.295	31.295	29.568

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67489.2	1580	2e-24	619 - 678	100	60 / 60	plus	ABC12316 ABC16415 ABC43123
MLOC	MLOC_67489.3	1557	2e-24	492 - 551	100	60 / 60	plus	ABC12316 ABC16415 ABC43123
MLOC	MLOC_67489.1	1910	2e-24	900 - 959	100	60 / 60	plus	ABC12316 ABC16415 ABC43123
JLOC1	JLOC1_44566.3	1816	8e-25	593 - 652	100	60 / 60	plus
JLOC1	JLOC1_44566.2	1918	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_44566.1	2036	8e-25	813 - 872	100	60 / 60	plus
Harvest21	ABC11202	777	3e-25	678 - 737	100	60 / 60	plus
Harvest35	U35_19909	777	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_19909 777 Hv_44K_v2
CGGCACCAGCCAGCACCTAATCTTCGTCGTCTATAAAGCGCCACTCCGCGCCGCAGTGGC
AACGGCGCCACCGAAGCCAGACCACGCTACTCTCCACTCCACTCAACTCTTCCCTCACGC
AGACCCGCGCATCCATCGGCCTCGCCTCGGGCTCCATCTGATCCACGGATTCTGGAAGGG
AGTATCATTCTAGTTCCCGAGTCGTACGTGATCCCGCCGAAGCGTGAGCTCGAGCAACAG
CCACGCAGGCAGGAACCAGGATGGTGACCAAGGTGGTGGACCTCCGCTCCGACACGGTCA
CCAAGCCATCGGAAGCCATGCGTGCCGCCATGGCCGCCGCGGAGGTGGACGACGACGTGC
TGGGCGCGGACCCGACCGCGCAGCGCTTCGAGGCGGAGATGGCCAGGATCATGGGCAAGG
AGGCGGCCCTGTTCGTGCCCTCGGGCACCATGGGCAACCTTGTCTCTGTCCTCGCGCACT
GCGACACCAGGGGCAGCGAGGTCATCCTCGGGGACAACTCCCACATCCACATCTACGAGA
ACGGCGGCATCTCCACCCTCGGCGGCGTCCACCCCAAGACCGTGCCCAACAACCCCGACG
GCACCATGGACGTCCACAAGATCGTCGCTGCCATCAGGCACCGGGACGGGGCCATGTATT
ATCCCACCACCAGGCTCATCTGCCTCGAGAACACGCATGGAAATTCTGGTGGGAAATGTA
TATCTGTAGAGTACACCGANCAGGTTGGTGAAGTTGCTAAAACCCATGGCTTGAAGC

Homology of Contig U35_19909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43650.2	373	1e-95	protein\|L-allo-threonine aldolase, putative, expressed
Brachypodium v1_2	Bradi5g15710.1	373	2e-100
Arabidopsis v10	AT1G08630.1	358	1e-83	\| Symbols: THA1 \| threonine aldolase 1 \| chr1:2743948-2745685 REVERSE LENGTH=358