barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13880_PI390587928Hv_44K_v2AATTACAATCAGTTCCAGCTACTCTGGTTCTTTAGCAGCATTTGCTATCACCTGGCAGGA411GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6132.1001.1671.1790.5380.616
Raw 33.42445.66720.68235.6573.2985.522



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_44256.524553e-211913 - 19729758 / 60plus ABC03596 ABC05239 ABC12712
MLOCMLOC_44256.126883e-212149 - 22089758 / 60plus ABC03596 ABC12712
MLOCMLOC_44256.225243e-211985 - 20449758 / 60plus ABC03596 ABC05239 ABC12712
MLOCMLOC_44256.424923e-212049 - 21089758 / 60plus ABC03596 ABC12712
MLOCMLOC_44256.325213e-211982 - 20419758 / 60plus ABC03596 ABC05239 ABC12712
JLOC1JLOC1_28665.126312e-211982 - 20419758 / 60plus
Harvest21ABC035984833e-25412 - 47110060 / 60plus
Harvest21ABC0359624786e-221891 - 19509758 / 60plusABC03596
Harvest35U35_12514833e-25412 - 47110060 / 60plus
Harvest35U35_124924516e-221891 - 19509758 / 60plus



Contig Sequence (483 bp)

>U35_1251 483 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATAATGAATAAACTTAAATTTCATAAATCGGTTTCCATATAT
GATATGGAAACATTTTGCATATCAAACTAATTCCGAAAACGCATGCCTATTTCACCACTT
CCGTTGATAATTTAACAAAAACCTTGGTCTATTGCAGCATGCCCCCCTTATTATTACAAA
GCTGACAGGACGAACCCCTAAAGAAGCAACAAAACAGGGGACACGGGGACCGCCCTCGTG
CCGATTCGGCACGAGGGTTCATATGGCAAGTTATGCCCCGCTCTTTGTAAACGACAACGA
TCAAACGGGGAATCCAAATGCTATCGTCTTCAACTCCTGGCAACAATACGGAACTCCTAG
TTACTGGATGCAAAAGTTTTTCCGCGAATCTAGGGGGGCCATGATTCATCCAATTACAAT
CAGTTCCAGCTACTCTGGTTCTTTAGCAGCATTTGCTATCACCTGGCAGGATTCCGGGAA
TAA



Homology of Contig U35_1251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None