barSeed - Barley Seed Development Database

Probe CUST_13735_PI390587928

Source Contig U35_5522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13735_PI390587928	Hv_44K_v2	GTCAAATTCCTCGTATCACACGGAAGTTGACAGAATGACACAACTTTCATTGACCTTTGT	2651	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.002	1.003	0.812	1.129	0.725	1.254
Raw	26.723	42.778	30.252	68.753	14.698	27.343

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56099.2	2855	2e-24	26 - 85	100	60 / 60	minus	ABC03596 ABC12712
MLOC	MLOC_56099.1	2902	2e-24	27 - 86	100	60 / 60	minus	ABC03596 ABC12712
MLOC	MLOC_56099.3	2736	2e-24	26 - 85	100	60 / 60	minus	ABC03596 ABC05239 ABC12712
JLOC1	JLOC1_36261.5	2740	8e-25	2651 - 2710	100	60 / 60	plus
JLOC1	JLOC1_36261.4	3171	8e-25	3082 - 3141	100	60 / 60	plus
JLOC1	JLOC1_36261.3	2581	8e-25	2492 - 2551	100	60 / 60	plus
JLOC1	JLOC1_36261.2	2688	8e-25	2599 - 2658	100	60 / 60	plus
JLOC1	JLOC1_36261.1	2684	8e-25	2595 - 2654	100	60 / 60	plus
Harvest21	ABC12712	2458	3e-25	2327 - 2386	100	60 / 60	plus	ABC12712
Harvest35	U35_5522	2783	3e-25	2652 - 2711	100	60 / 60	plus

Contig Sequence (2783 bp)

>U35_5522 2783 Hv_44K_v2
AACAAACTCAGCCCCCAAAGCCGTTGGACGGATGGTTGCCACGACGAATGCGCCGCGCAC
GAACTAAAAGGCCGGCGATGCGGATAGGCACCACAGCTCGCTCCGGGGCCCACGCGTGTC
AGTGGCCAGACGCCGCCGCCGAAGCACACCCCGGCAATCCAACCAGCCGTGGCGCCGCCA
GCCTCCGTCATCCCACGGCGGAGGCCGTTGTGCACCCCGCGCGCTTCACTTCGAAGCCAC
CGTCGCGTCGCCTCCGGCCTCGCCTACTTAAGGCCGCAGCCTCCGGGTCTCCCTGCACCT
CGCGCTCACTCCTCGACCTGTGCTGCCTGATTGGTTAGGCGTTAGAACTTGGAGCATATG
GGTTCCAAAGAAATGCCCCGTCGTACTCGTACTATTCTCTGCTTCTTGCTTCTCTTCTGC
GTGAGCTGCAAATGTTTGGCATCAGAATTTGAGATCACCCAAGTGGCAAGCCTTGGTGTT
GATTCCTCACCGCACCTTGCTCGAAAGATCCCTGATACGCTGTTTGGAATATTCTTTGAG
GAGATCAACCATGCAGGAGCTGGTGGAATATGGGCAGAACTTGTTAGTAATAGAGGTTTT
GAAGCAGGAGGCCCCCATACTCCATCAAATATTAATCCATGGTCCATCATTGGAGATGAC
TCTTCCATATTTGTGGGAACAGACCGTACGTCATGTTTCAGTCGAAACAAGGTTGCTCTA
AGAATGGAGGTTCTCTGTGATAACTGCCCAGTTGGCGGTGTTGGCATTTACAACCCTGGG
TTCTGGGGCATGAACATAGAAGATGGGAAGACCTACAATCTAGTTATGCATGTCAAGTCA
CCAGAGACGATAGAAATGACAGTTTCACTAACAAGCTCTGACGGGCTACAAGTTTTGGCT
TCAGCTGCCATACGAGTACCCGGCGGATCAAATTGGATAAAATTGGACCAGAAGTTGGTT
GCTAAAGGAACAGACAGAACCTCAAGACTTCAAATAACAGCTAGGACGAAGGGAGTTGTC
TGGCTTGATCAAGTATCACTCATGCCTTCGGATACATACAAGGGGCATGGTTTCCGCACA
GAACTCATATCCATGCTTTTGGATTTAAAACCCCGGTTCTTGAGATTCCCTGGAGGTTGC
TTTGTTGAAGGCAGTTGGTTAAGAAATGCATTCAGGTGGAGGGATTCTATAGGTCCATGG
GAAGAGAGGCCTGGACACTATGGGGATGTCTGGAATTACTGGACGGATGATGGCCTCGGA
TATTATGAGTTTCTTCAGCTTGCTGAAGACCTTGGTGCTGCCCCAGTCTGGGTATTCAAC
AATGGAATCAGCCACCATGATGAAGTTGATACTACTGCTATTGCTCCTTTTGTAAAGGAT
ATACTGGACAGTCTAGAATTTGCAAGGGGGAGTGCAGAATCAACATGGGGTTCTGTTAGA
GCTGCAATGGGGCATCCTGAACCATTCCCAGTCAAATATGTTGCAATTGGAAATGAAGAT
TGTGGGAAAGAAAATTACCGTGGTAACTACCTTAAGTTCTACAATGCTATAAGAGAGGCC
TATCCAGACATTCAGATGATTTCAAATTGTGATGGTTCATCTACACCCCTTGACCATCCT
GCTGATTTATATGATTTCCATGTCTATACCGGTTCCAGTGCACTATTTTCCATGAAGAAT
ACATTTGACAATACCTCTCGTAGTGGGCCCAAGGCTTTTGTTAGCGAGTATGCTGTTACA
GGAAACGACGCAGGCAGAGGAAGTCTTCTTGCTTCATTGGCAGAGGCCGCTTTCCTTACT
GGGCTGGAGAAGAATAGTGATGTTGTTCAGATGGCAAGCTATGCACCGCTCTTCATAAAC
GATAACGACCGCACGTGGAACCCAGACGCTATCGTCTTCAACTCCTGGCAGCAATACGGA
ACTCCCAGTTACTGGATGCAGACGCTTTTCCGAGAATCAAGCGGTGCTACGGTCCATCCC
ATCAGTCTCAGTTCAAGCTGCTCTGGTTTGCTGGCAGCATCTGCGATCACGTGGCATGAT
GACGAGAACAGCTTCCTGAGAGTGAAGATTGTGAATTTCGGGCCAGATGCCGTGGGCCTC
ACCATCTCGGCGACTGGGCTCCAGGGCAGCATCAATGCGTTCGGATCCACCGCGACCGTT
CTCACATCTGGCGGTGTAATGGACGAGAACTCTTTCGCTAACCCAAACAAGGTTGTGCCG
GTGACGGTCGAGTTGCGCGACGCTGCGGAGGAGATGCAGGTCACGCTGCCTCCTCACTCT
CTCACTGCATTCGACCTGGCGCTGGCGCAGTCCAGGCTTGTAGCGGACGTGTGAAGCGAA
TGACACGGTGTCGGTGAATAAGGGAACGATGGGCAGGGCAAAGCACCGGCAACAGCAAGC
GGAGATGGGTCAGTGCGCGCGCTTGTGTGCCGATAAAGCACTGGATCTTTTGTGTATGGC
GCCTTGGCGGTGTGGCAGGAAGGAAATACATTACTATGCTAAATAAAAATCACGTCAGGC
TTATTTTCTCTTCTTTTCTTTTCTAATGAAAGCACATTTTTAGTTTTTCTTGGCGAAGGC
AATGGAAAAGGTCAGATGAACCCCAGCCTCTGCATCGATAAGGCGAAGGCAAAGGAAAGG
TGTGTCATTTTGTCAAATTCCTCGTATCACACGGAAGTTGACAGAATGACACAACTTTCA
TTGACCTTTGTCATGTAATACAACATCATAACAAGCCTTGCAAGCAATGTGATTAAGGAG
TTAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g03730.1	659	protein\|alpha-N-arabinofuranosidase A, putative, expressed
Brachypodium v1_2	Bradi4g43710.1	657
Arabidopsis v10	AT3G10740.1	678	\| Symbols: ASD1, ARAF1, ARAF, ATASD1 \| alpha-L-arabinofuranosidase 1 \| chr3:3361031-3364573 REVERSE LENGTH=678