barSeed - Barley Seed Development Database

Probe CUST_13621_PI390587928

Source Contig U35_333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13621_PI390587928	Hv_44K_v2	CATCTCCATCATTGTTTCATGTAAATGTTAAATCTCGCCAATTTGAACCTATAGTTCCAC	442	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369363	820	7e-23	713 - 772	98	59 / 60	plus	ABC04556 ABC04557 ABC04559 ABC04560 ABC09911 ABC16638 ABC38793
JLOC1	JLOC1_18162.1	964	8e-25	851 - 910	100	60 / 60	plus
Harvest21	ABC16637	506	3e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC04557	753	1e-23	673 - 732	98	59 / 60	plus	ABC04557
Harvest35	U35_333	506	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_263	766	1e-23	686 - 745	98	59 / 60	plus

Contig Sequence (506 bp)

>U35_333 506 Hv_44K_v2
AGCTTCAACACCCTTTCGATAAATGCAGAATGCTTTACCTCTTCTCAGCCAAATTGACCA
TGTGGCATATTTTGTTTTTCTCTGTTGCAGATTCTTTACTATTTCCACCGTAATAGTTCA
TTTGTACTATGCACATCTGCTGAAGATTGATGAGGAAGACTTTGGAGGCCATGCCGCCCT
ACTTCAGGAGGGGCTCTTTGCCTCGTTCACCCTTTTCCTGCTTTCATGGACTCTAGTATA
CAGCTTGGCTCACTTCTGAGAAGCCCGTCTGCGGAACTATGATGCTGGATTTTCGTAGTT
CATTTCATTCACTCTTTTGTACAATTAGCTATCATGGATGTAATGTCATAGTACTGTAGA
ACAACGTCATGGAGCTATAACTGTAATTTATATAGAATGCCTTCCACTTGTTGGGTCCAT
TCGGTCAAGCTCAAAGTAATATCATCTCCATCATTGTTTCATGTAAATGTTAAATCTCGC
CAATTTGAACCTATAGTTCCACTCAC

Homology of Contig U35_333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None