barSeed - Barley Seed Development Database

Probe CUST_13427_PI390587928

Source Contig U35_1601

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13427_PI390587928	Hv_44K_v2	CTGGAAGCAAACAGTGTATCATCCGTCTTATGTTTCAGTGATCCCTTGCCCTGCAAAAAA	610	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51422.1	768	9e-22	276 - 330	100	55 / 55	minus	ABC04367 ABC04368
MLOC	AK359290	625	3e-21	572 - 625	100	54 / 54	plus	ABC04367 ABC04368 ABC04369
JLOC1	JLOC1_32852.1	839	5e-22	337 - 391	100	55 / 55	minus
Harvest21	ABC04368	679	3e-25	611 - 670	100	60 / 60	plus	ABC04368
Harvest35	U35_1601	681	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_1601 681 Hv_44K_v2
GCTTCGCCGCCTAAAATCTGCACTACACTAGAGTACACCGGCCCAGAGGACTCATCTCAA
AGGAATGGCGAGCCCAATGGTGGCGGCTCCAATCCGCATCAACAGCCTCAGATACGCCCC
TCCTTCCCCAGCACCCAGAGGACGGTTCGTGGCGGCGAGGGTGAGGGCGTCGGCGGAGGC
GATGGCGACGGAGAAGCTCGGCGTGAGGGTGGAGCGCAACCCGGCTGAGTCCCGCCTCTC
GGAGCTCGGCGTCCGCCAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGAC
CTACTCGGCCAAGGAGACATGCTACCTGCTGCAGGGGAAGGTGAAGGTGTACCCGGACGG
CGAGGAGGGGTTCGTGGAGATCGCTGCCGGGGACCTGGTGGTGTTCCCCAAGGGGATGAG
CTGCACCTGGGACGTCACCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGCTCTAGAT
TGAGGTATTTGTAGCCGGATTGTGTGATGCTCGACTGAATCTCTTCTCTTGTCGTGGAAT
AAAAACGCCGGATTAGTGGATTGTGTTTGTCCAACCTTCTCTGTGGCGTGTTCATGGCTG
GGCTCCAGAGCTGGAAGCAAACAGTGTATCATCCGTCTTATGTTTCAGTGATCCCTTGCC
CTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36760.1	155	4e-59	protein\|enzyme of the cupin superfamily protein, putative, expressed
Brachypodium v1_2	Bradi5g11100.1	136	6e-65
Arabidopsis v10	AT4G10300.1	134	1e-51	RmlC-like cupins superfamily protein \| chr4:6384564-6385946 FORWARD LENGTH=134