barSeed - Barley Seed Development Database

Probe CUST_13426_PI390587928

Source Contig U35_1602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13426_PI390587928	Hv_44K_v2	CCTGTACGATGTGAAAAATGTAATGTTTGCCCGTTATTTTGTTTGGATGTTTTTGTCACT	1292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249311.1	1510	2e-24	1300 - 1359	100	60 / 60	plus	ABC04367 ABC04368 ABC04369
MLOC	MLOC_66919.4	657	2e-24	465 - 524	100	60 / 60	plus	ABC04369
MLOC	MLOC_66919.3	1313	2e-24	1202 - 1261	100	60 / 60	plus	ABC04369
MLOC	MLOC_66919.1	1507	2e-24	1317 - 1376	100	60 / 60	plus	ABC04369
JLOC1	JLOC1_44148.1	1430	8e-25	1231 - 1290	100	60 / 60	plus
Harvest21	ABC04369	1461	3e-25	1266 - 1325	100	60 / 60	plus	ABC04369
Harvest35	U35_1602	1488	3e-25	1293 - 1352	100	60 / 60	plus

Contig Sequence (1488 bp)

>U35_1602 1488 Hv_44K_v2
AAAAATCCGCATCAACAGCCTCAGATACGCCCCTCCTTCCCCAGCACCCAGAGGACGGTT
CGTGGCGGCGAGGGTGAGGGCGTCGGAGAAGCTCGGCGTGAGGCTGGAGCGCAACCCGGC
CGAGTCCCGCCTCTCGGAGCTCGGCGTCCGCCAGTGGCCCAAGTGGGGGTGCGAGAAGAG
CAAGTTCCCGTGGACCTACTCGGCCAAGGAGACGTGCTACCTGCTGCAGGGGAAGGTGAA
GGTGTACCCCAGAGTAGTCCGCCCAAATCGATCAAAAATCCCCGGCACCGTCCTCCCGGA
AGCCACCGGCGGCGCCTAAACGCCGGTGTCCCACGGAGCCCAATCCATCTCTCTTCGCCT
GTTCGCGGTCCGTTGAAAGCGAAAGAGGCCGTTAGGGTTTTGCCGGCGCCTCTCCGATGG
CGGAAGATGCTGGTAGCCGGATTGACATAGCCAACCTCCTTTCCCTCAGCAAGGACCTCG
TCGGGGTGCTCCGGGGCAGAAAGGACGTCGAATCCCTCGCGCAGGCCTCCAACTTTGCAC
GGATGCTGCGCTCCGCCAGCCACTCCAAGTCGGAGAACCTCGAGCGCCAAGTCAAAGAGT
ATCAGGAAAAAATAAACTCCTGCAAGGAAAAGTTAGACAAGGTAAAAGCTGAAACAGTTA
CTGATGAAGAACTGAATATGGTACAAAATGAGATGGAGGAGAAACTGCAGGGAAAGCAAC
ACCTTCGCCAAGACTTAAGAGCGGTGAGTGATGAAGTTGATGACCTAGACCATCAAAGGA
CTTCTATAGAAGAAAGGAAGGATGCTGTGAAGAAGAAGGAGAAAGACATGCTGAAGGCAC
AAAGTATGCTTTCCATGTTTGTGACGGTTACAAAAACAATTCCAAATTTCGAAGATCAGG
AGAAGATTTCTGGATATACTGTTGACAAGAACATAAAGAAGCTAGATAATTTTGAATTTG
AGAAGACAATGTCATCAGTTAAGATCTGCGACAAGCTTTGGAAAATGATTTAGGGCCTGG
TACCTGCAGATCATAGTCATTGTACAATAGCAGCAATTGCATTTGTAGACTGTTGTGCAA
GGTAACCACCCACCAATTGGAAGAATGCAACTCTCCCAGTTGCTTCAAATGACCTAGTTG
TGTGGCATCCTGTTATTCATATCTTGGCAAATAGACTAGCTCAGCTCTGTTGTTGGTCTG
GATTTGATTTCCTGAAGTGGCATTTCACTCAATTTTAGTTTCAGAAGCCAAATCTGTATC
AGCACTTGCTACTCCGTGCTGTACGTCTTAGGCCTGTACGATGTGAAAAATGTAATGTTT
GCCCGTTATTTTGTTTGGATGTTTTTGTCACTTTTTCTTCATGTTGCTCACTTGTATGGT
TTATAAAATAATGTTGAAATTATGTGATCATCATACATTGATGTGTGATATGTAAACTAA
CTGAAATATCATTTGCTCTGTTTGTTTCAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_1602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None