barSeed - Barley Seed Development Database

Probe CUST_13151_PI390587928

Source Contig U35_38541

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13151_PI390587928	Hv_44K_v2	CGATGCGTGCTTAAATTTTGGTGTCCGTATGCTATTAGTCTTAATGATTTTAATCCATTC	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17268.1	552	2e-24	150 - 209	100	60 / 60	plus	ABC01038 ABC31758 ABC32001 ABC36919
JLOC1	JLOC1_11921.1	401	8e-25	150 - 209	100	60 / 60	plus
Harvest21	ABC01038	763	1e-23	688 - 744	100	57 / 57	plus	ABC01038
Harvest21	ABC36919	467	2e-22	275 - 332	98	57 / 58	minus	ABC36919
Harvest35	U35_38541	522	3e-25	446 - 505	100	60 / 60	plus
Harvest35	U35_13872	1030	5e-23	702 - 757	100	56 / 56	plus

Contig Sequence (522 bp)

>U35_38541 522 Hv_44K_v2
GCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCA
CCCTCGCCGACTACAACATCCAGAAGACCTACACCAAGCCCAAGAAGCAAAAGCACAAGC
ACAAGAAGGTGAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGACGCCACCGGCAAGG
TCACCAGGCTCAGGAAGGAGTGCCCCAACGCCGACTGCGGCGCCGGCACCTTCATGGCCA
ACCACTTCGACCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGG
CTTAGAGGTGGCTTGCGTTTGCTCTGTTCTTTTACCTACCTACCAATCGAGAACCGAACT
CATTTAGATGTGTCCCGTTTGTCTTTTAAGCTGAAACCTTGGAGTATTATGTTTCCTGAA
TATTTCATCGCCTACTCCTGTAATGCGATGCGTGCTTAAATTTTGGTGTCCGTATGCTAT
TAGTCTTAATGATTTTAATCCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_38541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None