barSeed - Barley Seed Development Database

Probe CUST_12846_PI390587928

Source Contig U35_21813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12846_PI390587928	Hv_44K_v2	CAATCAGTTGCAGGCTATATTTCTTATAGTATCCGAGTTGCTTGACGACGTCCGCTACTC	625	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356508	1305	2e-24	613 - 672	100	60 / 60	plus	ABC01971 ABC01976 ABC43517
MLOC	MLOC_44640.3	1833	2e-24	444 - 503	100	60 / 60	minus	None
MLOC	MLOC_44640.4	1726	2e-24	335 - 394	100	60 / 60	minus	None
MLOC	MLOC_44640.2	1184	2e-24	449 - 508	100	60 / 60	minus	None
MLOC	MLOC_44640.1	1256	2e-24	491 - 550	100	60 / 60	minus	None
JLOC1	JLOC1_28942.2	1272	8e-25	723 - 782	100	60 / 60	plus
JLOC1	JLOC1_28942.1	996	8e-25	447 - 506	100	60 / 60	plus
Harvest21	ABC17822	685	3e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_21813	685	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_21813 685 Hv_44K_v2
CTGCCTTTTTCCTTGCACTTCTCCCCCATTCTGTACGCCGCCATCCCCTCGGCATGGGCT
TCTCCTCGCCGCCGCCGACCTCCACAGCCTCCCAGGACGGCGACGACGACCGCCACCAAG
ATGTCATGTGGGAGAGGCCGACGCACGCTAGGATCCTCGTCTCGGACGCCGACGCGGGCT
GCATCTACGGCAGGGCCGGCTCCGCTGTCCACGCCATGGACGCCGGCTCCGGGGCCAACA
TCAAGATCTCCGCCGGAGGCCGCCCCCTCCCCGCCACGGACCGCAGGGTCGTCTTCGTCT
CCGGCCTCTTCCCCGCCGTCATGGACGCCGCAGACCTCGTCCTCCAGAAGCTCTTCTACC
TGGGTGACCAGGTGATTGATGCTGATGCTACCGTGGTGCTCGTGGTGCCCGACGACTCCT
ACAACTTACATTCCCTTCCTGTTCTCATGCCCAATATTGATGTGCTTCAAATGAACTGTA
TGGTATATGCTCTCCACTCAACAAAAGGCCCAAGGGAGCGTGCAATGTCCTTCGCCGAGG
AGTCAAATACTAGAATCATGGTCTCACCCTACGCCATCTGCTACGGTTTCCACGATAGAC
TGGTTACGATCACTGGACACTTGGACAATCAGTTGCAGGCTATATTTCTTATAGTATCCG
AGTTGCTTGACGACGTCCGCTACTC

Homology of Contig U35_21813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None