barSeed - Barley Seed Development Database

Probe CUST_1263_PI390587928

Source Contig U35_30956

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1263_PI390587928	Hv_44K_v2	ATGGATTAATTGGATGGACCTATCATCACAAAAAGTTCCAGAGCTGCACAAATCCCTATA	567	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19721.1	602	2e-24	335 - 394	100	60 / 60	plus	ABC11623 ABC44846 ABC44857
JLOC1	JLOC1_13667.1	737	8e-25	386 - 445	100	60 / 60	plus
Harvest21	ABC31089	627	3e-25	568 - 627	100	60 / 60	plus
Harvest35	U35_30956	627	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_30956 627 Hv_44K_v2
GTGGACTCCATTAGCATGAGCCCACATAAGTGGCTTCTCACGTGCCTCGATTGCACATGC
CTCTACGTTCGCGATGCTCACCGATTGAGTGACTCATTGGAGACCAACCCGGAGTACCTC
AAGAACGATGCTACTGATTCCGGTGAGGTCACCGATCTTAAGGACATGCAGGTCGGCGTC
GGTCGGCGCTTCCGTGGGCTCAAACTTTGGATGGTCATGCGCACCTATGGTACCACAAAG
CTCCAAGAGCACATCCGTAGTGATGTCACCATGGCTAAGATGTTTGAAGATTTCGTCCGT
GCCGACAGCAGGTTCGAGGTGGTTGTACCAAGAAACTTTGCTCTTGTGTGCTTTAGGATC
AAACCAACTGGAGCCATGACAGAAGAGGATGCCGACAACGCCAATCGTGTGCTAATGGAC
AATCTGAACAAGACAGGCAAGGCTTATCTTGCGCATACGGTGATTGGTGACAAGTTCGTG
CTCCGGTTCGCCGTTGGATCATCTCTGCAGGAGGAGAGGCATGTGAGGAGTGCATGGGAC
CTCGTCAAGAAGACTGCAAGCAGCATAATGGATTAATTGGATGGACCTATCATCACAAAA
AGTTCCAGAGCTGCACAAATCCCTATA

Homology of Contig U35_30956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04540.1	515	1e-107	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g14750.1	511	3e-121
Arabidopsis v10	AT2G20340.1	490	2e-57	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr2:8779804-8782490 FORWARD LENGTH=490