barSeed - Barley Seed Development Database

Probe CUST_12510_PI390587928

Source Contig U35_652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12510_PI390587928	Hv_44K_v2	AGCTAGTTTGCTACAGATGTGCCGCTGCCTTCATTTGAATGTTGCTTGTTTATCAAAAAA	868	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13139.1	3039	3e-21	2802 - 2855	100	54 / 54	plus	ABC00036 ABC04409
JLOC1	JLOC1_8861.1	1076	2e-21	737 - 790	100	54 / 54	plus
Harvest21	ABC00868	668	6e-22	594 - 647	100	54 / 54	plus
Harvest21	ABC49012	124	8e-21	28 - 85	97	56 / 58	minus
Harvest35	U35_652	940	3e-25	869 - 928	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_652 940 Hv_44K_v2
CACGCGTCCGCGGACGTCGCCCTAACCGCGACGGATGGCCTCCGCGGCAGCCTGGAGAGT
GTCGTTGTACGTGGGAGCCACCCGACGCGCGGCGTCACCGACAGCGGGATCTCTGCGATC
GCCGGTGGGTGCCCCTCGCTTAGCTCGCTCGCCTTGTGGGACGTGCCACTTGTGACGGAC
GCCGGGCTCGCTGAGATCGGCGCCGGCTGCCCCTCCCTCGAGAAGCTCGACATCACCGGC
TGCCCGCTGGTCACCAACAAGGGCCTCGTCGCCGTCGCTCAGGGCTGCCCGGATTTGAAG
ACGCTCGCCATTGAATCATGCTCTGACGTTGCCAACGAAGGACTCAAGGCCATCGGCAGG
TGCTCCAAGCTGCAGGAGGTGAACATAAAGAATTGTGCGTATGTTGGTGACCAGGGAGTG
TCTGGTCTCATCTGCTCCCCGACAGCCTCGCTTGCCAAGGTCTGCCTTCAGGGTTTGAGC
ATCACTGATCCTTCTCTTGCTGTGATTGGGTACTACGGAAAGGCGATCACAAACCTCACC
CTCACTCGCCTGTCATCGGTCGGCGAGAGGGTTTTTTGGGTGATGGCAAACGCCCTTGGC
CTGCAGAAGCTCCAATGTATGAGCATCACCTCCTGCCCAGGAGTCACCGAGCTGGCACTT
GTTTCCATTGCCAAGTTCTGCCCGAGCTTGAAGCAGCTTTACCTCAAGAAGGAGGTTGCT
GCTTAGAATACCTTAGTGGATGTTGCATGTTGAGTTTTTTGTTCCAAGTTGGATCTGCTC
TATGTTCCAGTGTTCTTAAAGCCAGAGTTAGTACAACTGTTTTCAGGAAACTATTTCATA
TCTTTTCATGGCTGTTATTGAATACCCAAGCTAGTTTGCTACAGATGTGCCGCTGCCTTC
ATTTGAATGTTGCTTGTTTATCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40360.1	665	6e-120	protein\|OsFBL30 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi1g36530.1	643	8e-129
Arabidopsis v10	AT2G25490.1	628	9e-70	\| Symbols: EBF1, FBL6 \| EIN3-binding F box protein 1 \| chr2:10848018-10850275 REVERSE LENGTH=628