barSeed - Barley Seed Development Database

Probe CUST_12490_PI390587928

Source Contig U35_31171

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12490_PI390587928	Hv_44K_v2	TGTTTGAGCTAGATCGTGAGACGAAGATGGCCTCCAACCAGAACCAGGGGAGCTACCACG	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358283	2392	2e-24	77 - 136	100	60 / 60	plus	ABC02406 ABC02407 ABC02736 ABC02737 ABC02738 ABC37622
MLOC	MLOC_72442.2	1034	2e-24	777 - 836	100	60 / 60	minus	ABC02405 ABC02406 ABC02407 ABC02408 ABC37877
MLOC	MLOC_72442.1	1126	2e-24	867 - 926	100	60 / 60	minus	ABC02405 ABC02406 ABC02407 ABC02408 ABC37877
JLOC1	JLOC1_48179.4	1008	8e-25	74 - 133	100	60 / 60	plus
JLOC1	JLOC1_48179.3	752	8e-25	70 - 129	100	60 / 60	plus
JLOC1	JLOC1_48179.2	718	8e-25	69 - 128	100	60 / 60	plus
JLOC1	JLOC1_48179.1	782	8e-25	67 - 126	100	60 / 60	plus
Harvest21	ABC31320	367	3e-25	50 - 109	100	60 / 60	plus
Harvest21	ABC02407	1032	3e-25	66 - 125	100	60 / 60	plus	ABC02407
Harvest35	U35_31171	367	3e-25	50 - 109	100	60 / 60	plus
Harvest35	U35_791	1032	3e-25	66 - 125	100	60 / 60	plus

Contig Sequence (367 bp)

>U35_31171 367 Hv_44K_v2
GCTAAGCAACAGCCTAAAGCGAGTCCGAGTGGTGATTCCAGTTCGTGTTTGTTTGAGCTA
GATCGTGAGACGAAGATGGCCTCCAACCAGAACCAGGGGAGCTACCACGCCGGCGAGACC
AAGGCCCGCACCGAGGAGAAGACCGGGCAGATGATGGGCGCCACCAAGCAGAAGGCGGGG
CAGACCACCGAGGCGGCCAAGCAGAAGGCCGCCGAGACGACGGAGGCGGCCAAGCAGAAG
GCCGCCGAGGCAACCGAGGCGGCCAAGCAGAAGGCGTCCGACACGGCGCAGTACACCAAG
GAGTCCGCGGTGGCCGGCAAGGACAAGACCGGCAGCGTCCTCCAGCAGGCCGGCGAGACG
GTGGTGA

Homology of Contig U35_31171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None