barSeed - Barley Seed Development Database

Probe CUST_12262_PI390587928

Source Contig U35_20903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12262_PI390587928	Hv_44K_v2	GCATGGAAAACATGTTGGATTTGTGATGCAAAGGAAGACATATGTAATGTGTGGAATTAT	696	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12061.1	1184	2e-24	61 - 120	100	60 / 60	minus	ABC15196 ABC17921
MLOC	MLOC_12061.2	1365	2e-24	26 - 85	100	60 / 60	minus	ABC15196 ABC17921
JLOC1	JLOC1_8058.1	1507	8e-25	1286 - 1345	100	60 / 60	plus
Harvest21	ABC17921	796	3e-25	697 - 756	100	60 / 60	plus	ABC17921
Harvest35	U35_20903	797	3e-25	697 - 756	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_20903 797 Hv_44K_v2
GCTGGACCTTGATGTTTTATTTTACCCTTGTCCTCAAAAGGGGCCAACATTTCGTCCAAA
GGTTTTAGAGATGGGAGGGAAGACACGGTTTCCTTACATGGTGGATCCAAACACAGGAGT
TGCCATGTATGAATCAGATGAGATCATAAAATACCTTGCGGACACATACGGCGATGGAAG
TGTTCCAATTATGCTATCGCTTGGTCTATTAACGACAATAACAGCAGGGCTTGCTATGAT
TTGGCGTGTACGGAAGGGATCTTACTACACTGTTTCAAAGCTTCCACCCCAGCCAATAGA
GATCTGGGCATACGAGGGATCCCCTTTCTGTAAAATAGCACGAGAGGCCCTTGTTGAATT
GGAGTTGCCACACTTGCTACACAGTTGTGCTCGTGGCAGCCCCAAGCGACAGGAAATTTT
CAAGAAACATGGCATTTTCCAGGCGCCTTATATCGAGGATCCTAACACGGGGGTCAAGAT
GTTCGAAAGCGCTGAGATCGTTGAGTACCTGAGGGCAACATATTCACTCTATCCTCAGTA
CCAAAATCTCTGAAGCGTTGATATATAGTATGGATTTAGAATATATCCTTTACAATTAAC
AGCGGAGTCCCAAATGTAATGTAGAAGTTGTATTCAGTTGTCACCCTTTGAGATTTTTTA
TGGTGGTGCGGAACCATGTGGTGATGAAATTTTGTAGCATGGAAAACATGTTGGATTTGT
GATGCAAAGGAAGACATATGTAATGTGTGGAATTATACATAAGAAAAAAAGGTAGTAGAA
GATAGATTTTTTTTTTT

Homology of Contig U35_20903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44400.1	342	1e-93	protein\|glutathione S-transferase, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g42820.1	335	3e-95
Arabidopsis v10	AT5G03880.1	339	2e-80	Thioredoxin family protein \| chr5:1038674-1041453 REVERSE LENGTH=339