barSeed - Barley Seed Development Database

Probe CUST_12204_PI390587928

Source Contig U35_20935

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12204_PI390587928	Hv_44K_v2	AGATTATGCGGAATTTCTAGCCGTGTCTCTTCATCTGCAAAGGATGGCAAATGACGAGCA	799	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371805	2140	2e-24	1548 - 1607	100	60 / 60	plus	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
MLOC	MLOC_43400.1	1908	2e-24	1279 - 1338	100	60 / 60	plus	ABC04593 ABC07135 ABC11168 ABC15997 ABC23641
JLOC1	JLOC1_28060.1	2154	8e-25	1278 - 1337	100	60 / 60	plus
Harvest21	ABC15997	1414	3e-25	800 - 859	100	60 / 60	plus	ABC15997
Harvest35	U35_20935	1420	3e-25	800 - 859	100	60 / 60	plus

Contig Sequence (1420 bp)

>U35_20935 1420 Hv_44K_v2
TCGCCAGGGGACACTACACGGAGCGCGCCGCCGCCAACGTCACCCGCACCATCGTCGAGG
TCGTGCAGCTCTGCCACCGACACGGCGTCATCCACCGGGACCTCAAGCCAGAGAACTTCC
TCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCCATCGATTTCGGCCTCTCCATTT
TCTTCAAGCCCGGTGAAAAGTTTTCAGAAATTGTCGGAAGCCCTTATTACATGGCTCCTG
AAGTATTGAAGAGAAACTATGGACCGGAAATAGACATCTGGAGTGCCGGGGTTATCTTAT
ATATTTTACTATGTGGAGTTCCTCCATTTTGGGCTGAGACCGAACAAGGGGTAGCACAAG
CTATTCTTCGTGGAAATATCGATTTTAAGCGGGAACCCTGGCCTAATGTATCGGAAAATG
CTAAAGATTTAGTTCGACGTATGTTGGAACCAGATCCAAAGCTCAGGTTAACTGCAAAGC
AGGTTCTCGAGCACCATTGGCTTCAAAATGCTAAGAAAGCTCCAAATGTTCCTCTTGGAG
ATATTGTCAAGTCAAGGCTTAAGCAATTTTCGAGGATGAATAGATTCAAAAGAAGAGCTC
TAAGAGTCATCGCTGATCATTTGTCTGCTGAGGAAGTTGAGGACATAAAGGAGATGTTCA
AGGCAATGGATACGGACAATGATGGAATTGTCTCTTGTGAAGAATTGAAGAGTGGGATAG
CAAAATTTGGCTCTCACCTTGCAGAATCGGAAGTGCAGATGCTTATTGAAGCTGTGGATA
CAAATGGCAAAGGAGTACTAGATTATGCGGAATTTCTAGCCGTGTCTCTTCATCTGCAAA
GGATGGCAAATGACGAGCACCTTCGGCGGGCCTTCTTATTCTTCGACAAGGATGGCAATG
GTTACATTGAGCCGGACGAGCTTCGTGAGGCTCTGAAGGACGATGGGGCAGCTGATAGCA
TGGAAGTTGTGAATGACATACTGCAAGAAGTTGACACCGATAAGGATGGCAAAATTAGCT
ATGACGAATTCGTGGCGATGATGAAGACGGGCACGGACTGGCGAAAGGCATCACGGCATT
ATTCGAGAGGAAGATTCAACAGCCTTAGCATGAAGCTTGTGAAGGACGGGTCCGTCAAAT
TGGGCGTGGAGTAAAAGGCATGGTGTTTATTTGTGCATGTAGTAGTTAGGCATTTGGGCC
CACTAGGCAGCAGCTCCTTTTAGTTTTTCTCATGGTCGTTTTGTGTGGAAATTTAGATAG
GTGGAACCCCATCACCCCTGATTGGCTTACATGTGTAATTAGTTCTCCTGGGTCACTGGC
AATCGCGCCTGCTTTTTGAACTACTGATGCTAAGTGTTGTACAATGTTTTGCCGTACACA
AATACAGTTTCTAGATTTGGCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g61590.1	552	protein\|CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g54080.2	537
Arabidopsis v10	AT3G51850.1	528	\| Symbols: CPK13 \| calcium-dependent protein kinase 13 \| chr3:19232667-19235526 FORWARD LENGTH=528