- Probe CUST_121_PI415269222
- Source Contig TA52199_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_121_PI415269222 | Hv_44K_v2 | TTGCATATTACAAGATAGCTAACCACTATAAATGGGCCTTGGATGAGCTATTCATTAAGC | 392 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374062 | 1766 | 2e-24 | 614 - 673 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.12 | 1903 | 2e-24 | 544 - 603 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.5 | 1420 | 2e-24 | 191 - 250 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.6 | 1320 | 2e-24 | 191 - 250 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.2 | 1383 | 2e-24 | 191 - 250 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.14 | 1568 | 2e-24 | 245 - 304 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | MLOC_19196.10 | 1481 | 2e-24 | 234 - 293 | 100 | 60 / 60 | plus | ABC15789 ABC18549 ABC19664 |
| MLOC | AK248762.1 | 1793 | 7e-23 | 571 - 630 | 98 | 59 / 60 | plus | ABC15789 ABC19664 |
| MLOC | MLOC_16752.1 | 1331 | 7e-23 | 1113 - 1172 | 98 | 59 / 60 | minus | ABC15789 ABC19664 |
| MLOC | MLOC_16752.5 | 1350 | 7e-23 | 967 - 1026 | 98 | 59 / 60 | minus | ABC15789 ABC19664 |
| MLOC | MLOC_16752.4 | 1364 | 7e-23 | 1144 - 1203 | 98 | 59 / 60 | minus | ABC15789 ABC19664 |
| MLOC | MLOC_16752.2 | 1492 | 7e-23 | 1113 - 1172 | 98 | 59 / 60 | minus | ABC15789 ABC19664 |
| JLOC1 | JLOC1_13318.10 | 1388 | 8e-25 | 162 - 221 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13318.9 | 1405 | 8e-25 | 176 - 235 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13318.8 | 1473 | 8e-25 | 244 - 303 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13318.7 | 1604 | 8e-25 | 185 - 244 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13318.3 | 1478 | 8e-25 | 249 - 308 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13318.1 | 1420 | 8e-25 | 191 - 250 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_11564.2 | 1768 | 4e-23 | 269 - 328 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC17734 | 699 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22707 | 855 | 1e-23 | 540 - 600 | 98 | 60 / 61 | plus |
Contig Sequence (625 bp)
>TA52199_4513 625 Hv_44K_v2 CGGCACGAGGACGCCGGCGATGGCTCATAACCCGCGTTACATCCGCCGCCTCCTCCTCGT CTCCGCCGCCGCGGCCTTCATCTACATCCAAGTGCGGCTCTTCTCTACCCAGTCTCATGA CGCCGGACGCCTCGCCCTCGCCGGAGCAGATCAACCTGATCTCCCCGTCGCCGCTGTTGT CATAATGGCTTGCAATCGACCAGACTATTTGCAGAGGACAGTTGAATCTATCCTCAAGTA CCAGAAAGCAGTTGCTTCAAAGTTCCCACTATTTATATCGCAGGATGGAACAAATGGAGA TGTAAAAAATAAGGCCCTGAGTTATACCCAAATAAGATATATGCAGCATGTAGATCTCGA ACCTGTGCACACTGAAAGACCAGGGGAACACATTGCATATTACAAGATAGCTAACCACTA TAAATGGGCCTTGGATGAGCTATTCATTAAGCATGATTTTCGCCGAGTTATCATTCTGGA AGATGACATGGAGATCGCCCCAGATTTCTTCGACTACTTCGAGGCTGCAGCGAAATTACT TGATACTGACAAGTCGATAATGGCTGTTTCTTCTTGGAATGACAATGGGCAAAAGCAGTT CGTTTATGACCCAAAAGCTCTTTAC
Homology of Contig TA52199_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g60820.3 | 364 | 1e-94 | |
| Arabidopsis v10 | AT4G38240.1 | 444 | 1e-79 | | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444 |