barSeed - Barley Seed Development Database

Probe CUST_1185_PI390587928

Source Contig U35_21120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1185_PI390587928	Hv_44K_v2	AGAGATAAGGTCCCTATCCCTTTGTGTGTGAGTGTATGGATGTTAATCGATCTGATTGAA	279	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32414.4	1259	2e-24	180 - 239	100	60 / 60	plus	ABC16634 ABC20228
MLOC	MLOC_32414.5	1248	2e-24	180 - 239	100	60 / 60	plus	ABC16634 ABC20228
MLOC	MLOC_32414.3	905	2e-24	273 - 332	100	60 / 60	plus	ABC16634 ABC20228
MLOC	MLOC_32414.2	1478	2e-24	300 - 359	100	60 / 60	plus	ABC16634 ABC20228
MLOC	MLOC_32414.1	972	2e-24	339 - 398	100	60 / 60	plus	ABC14039 ABC16634 ABC20228
JLOC1	JLOC1_21146.2	1094	8e-25	335 - 394	100	60 / 60	plus
JLOC1	JLOC1_21146.1	1500	8e-25	335 - 394	100	60 / 60	plus
JLOC1	JLOC1_21147.2	1352	8e-25	953 - 1012	100	60 / 60	minus
JLOC1	JLOC1_21147.1	1360	8e-25	961 - 1020	100	60 / 60	minus
Harvest21	ABC16634	772	3e-25	144 - 203	100	60 / 60	plus	ABC16634
Harvest35	U35_21120	908	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_21120 908 Hv_44K_v2
ACTTATGCAAATATATAAAGACATGAGGTCTTGGAATGAGATTTTGCCCATTATACAATG
GTGTAAAATTATGTTCTACGAAATTTAGGATGACGTGTGTTTCTCCCATATATATTTTTC
TAAACCCAAGAGCTTAGAATAGAGATAATAAAAACCAAAGAGTTAAAGTGTTAAAATAGT
AAGCCTGAGGGCTAAACTACAAAGTCTAATTAATCTGATGGCTCAATTCACGTTTCTGTA
GATAACAGAAAATGGAAGGACTAATCGGAAGAATGGGAAAGAGATAAGGTCCCTATCCCT
TTGTGTGTGAGTGTATGGATGTTAATCGATCTGATTGAATCCTTAGCTCCAATTCAATGC
AGCGACCATCGCCTTGCATCTGGTCGCCTCATACGCTGAACGGCGCCGCGCTGGAGCCAC
CGCCACGTCTTGCCGGTGTAGGTTGGTCATGGCCCTCGCCACCATCACAGGCCGTTGGCC
GTGCGCCCGCTTCCCGTTGCCGCTGATGCCGGAGGGCGTCAAGCCAGGCCATCGCCTTAG
CAAATCATGTTGAGGGAGGCCCGACGCTTCTGCCGCACCTTGGCGGGACGTCGTCGCGAG
GAGCAGCCTGGCCGAAGGATGCATCCACTGGTGTCGCCGTCGGAGTTTTGCTTTGGACAG
CATTGATATGCCGCCCTGGAGGTTAGTGCTTATTGTGTTGGAATAGGAGAAAATAAATAA
ATCGAATAACATCACTTGATGCTCTTATCGATGATTGCATCCTAGTTCTTGTTCTTCCTG
ATACTCATTGGTGTGTCGTCTTTCTACAATTTACCTTTTGTAGATCGTGTTTGAGGCGCT
TCGTCCTTGAATCGATGTATTCTTCTCTATTTTTCTGATATGAACTCAGATGGATGTAAT
TCTCGTGA

Homology of Contig U35_21120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None