barSeed - Barley Seed Development Database

Probe CUST_11729_PI390587928

Source Contig U35_29372

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11729_PI390587928	Hv_44K_v2	AACCTGAGCTGATCATTTTCATTTCCTTTCCCACCGGGTCGCTCCGTCGTCTATTAATTA	140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373804	4193	2e-24	3220 - 3279	100	60 / 60	minus	ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030
MLOC	MLOC_70709.1	2194	2e-24	1800 - 1859	100	60 / 60	minus	None
JLOC1	JLOC1_46938.1	1820	8e-25	162 - 221	100	60 / 60	plus
Harvest21	ABC28636	423	3e-25	141 - 200	100	60 / 60	plus
Harvest35	U35_29372	423	3e-25	141 - 200	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_29372 423 Hv_44K_v2
GGGAGGGAGGGAAGCTGCATGCATCGCCCGTCTCCCTCGCCATCCCCACCGCCTGCCCCC
TCCCATTTTGCCTCTCCCTCTCCTTGCCGGCCGGGTTGCAAGCAGGGCGCGCTCCAGCTC
TCTGCGTTCCCCTCGTCGGGAACCTGAGCTGATCATTTTCATTTCCTTTCCCACCGGGTC
GCTCCGTCGTCTATTAATTAGGAGCAGACGATCGATCGACAACGCCCAATTCGTTCGTTC
CAGTCCTCGGCTGCCATTTGGATTTGATCCGGCTGGCCGGCCGGGCCATGCGCTGGAGCT
GAGATAGGCCGGCGCCGACCACCGACATCGCCTGTGGTTCTCTCTCCCCCCCTCTCTCTT
GTCCGGTCCGGGAGGGGAGGAGAGAAGACCAGAAGGACCACCGACGACACTTCGCGGCGG
CGA

Homology of Contig U35_29372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None