barSeed - Barley Seed Development Database

Probe CUST_11497_PI390587928

Source Contig U35_38063

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11497_PI390587928	Hv_44K_v2	CTTGAGATGATATTACCTCACAAGCACTCTTGATGGATGCAACAAGTTATGTTTGCAGTT	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371010	3297	2e-24	3176 - 3235	100	60 / 60	plus	ABC11670 ABC18393
Harvest21	ABC33868	473	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_38063	473	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_38063 473 Hv_44K_v2
CGCTCCAAAGACGCTCCCCGACGTCGTCCAGCAGCCTCCTTCACAGGACTCGCTCCTGCC
TCGACTGGCTGGACGCGCAGGCCCCGACATCCGTGCTCTACATCAGGTTCAGCAGCGTGG
CGAGCATGAGCAGTGCCAACCTGGACCCATGTTATGCAACTTTGTGGTGTTGACAAGTAT
GCAGCTGATGCTTATGCAATATTTTGTGCGGGTAGGGCGAGGGAGATGGTACCTGATGAT
CACAACAGATGGATTTGTTCAGTTCCAGTACATGATTAGTGAAGTGCAAGGGGAAACAAA
TGTGGGTGACGCCATGCAGTCCTAGATGGGATAATTTTACATTCCAACTAGGGTTGGTTT
TGTGTTGGTTATGTACCTTGGATACTTTTCTCCCTTAGATTAGTGTGAAGCTTGAGATGA
TATTACCTCACAAGCACTCTTGATGGATGCAACAAGTTATGTTTGCAGTTGTC

Homology of Contig U35_38063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None