barSeed - Barley Seed Development Database

Probe CUST_11235_PI390587928

Source Contig U35_5792

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11235_PI390587928	Hv_44K_v2	AGCTGAGACGGTTGGACTAAGATGACATTTTTATAAAGGGTGATCACAAGTGTTAAAAAA	1275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3944.2	2222	9e-22	2106 - 2160	100	55 / 55	minus	ABC12636
MLOC	AK372202	3795	3e-21	3742 - 3795	100	54 / 54	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC11710 ABC12636 ABC27134 ABC27412 ABC29158 ABC29958 ABC30604 ABC30671 ABC32179 ABC37444 ABC43349
JLOC1	JLOC1_2383.1	1494	5e-22	1029 - 1083	100	55 / 55	plus
Harvest21	ABC12636	1346	3e-25	1276 - 1335	100	60 / 60	plus	ABC12636
Harvest35	U35_5792	1346	3e-25	1276 - 1335	100	60 / 60	plus

Contig Sequence (1346 bp)

>U35_5792 1346 Hv_44K_v2
ACTCCCCTCTGCCGTCTGCTCCCAAGACCCCACTCTCCTCCTCCACCGCCGCCGCCGCCG
CCGCAGCCGCCGTGCGAATCTATCTCGAGGGAGGGGGAGATGGCGGACGCACTGGACATG
TCCCTCGACGACCTCATCTCCAAGAACAAGTCCTCCTCCCAGCGCGGCCGCGGCCGCCGC
AACCAGGCCTCGGGCTCGGGCTCGGGCTCGGGCTCGGGCTCGGCGCCCGGAGGACCCGCA
CCCGCCGGCCGCCGCTTCCAGGCTCGCGCCGCCACCCGCGCTGCCGCCGCGCCCTACCAC
CAATTCAACTTCCAGCACCAGCCGCCGCCGGCTGCTTTAGCATATGCTGCCCAGCAGGCC
CATGCCTATGCCCATGCCCAGACGATGGCCTTGGTGGCGCCGCCGTCCGGGGTCGAAACG
GGCACCAAGCTATACATCTCCAACCTCGACTACAACGTCTCCAACGAGGACATCAAGGAA
CTCTTTGCTGAGGTGGGCGATCTCAAGCGGTACTCCATTAACTACGACAAGAGTGGAAGG
TCAAAGGGTACTGCAGAGGTTATATTTTCAAGGAAATCGGATGCTCTAGCTGCTCTAAAG
AGGTACAACAATGTGCAGCTTGACGGCAAACCCATGAAAATTGAGGTCATTGGAACAAAT
ATTGAGGCGCCACCAGCACCTGCTATTTTTACTTTGAATACCCCAACGATAGGAAACTTC
AATATTCCTTCCTACAGTGGACGTGGAAGGGGTGGTGATAGTGGTCGAGGATGGCCTCGG
GGCAGAGGTGGATTCGGCGGGCGTGGTGCTGTTGGGCGTGGTCGAGGACGAGGTGATGTT
GGTCGTGGGCGAGGGAGGGGAGGGCGTGGCAGCCAGCCAGTTTTTGCCAATGATCTAGAC
GCAGACTTGGACAAGTACCACTCAGAGGCGATGCAGACCAGCTAAATGGCTTCGGCCCTG
CCGCGCCTGCATCCCGCACAGCCATTAGCTTTGTGTAGGACTAGATGCGGTCATGTGTTT
TATTACTCCATCCATTCCTAAATATAAGTCTTTCTAGAGATTTCACTAAGTGACTACATA
CGAAGCAAAATGAATGAATCTACGCTCTTACATCCATATGTAGTCCCCTAGTGTAATCTT
TAAAAAGACTTGTATTTAGGAACGGAGAGAGTAGATTGTAATTTGTGAGACAAATGAAGC
GTCTGTCTTTGTTGTTTGATGATCAAGGTGGTGCGTTCCATTGTAACTCTAGTTTCTGTT
CCTCTGACTTGTAGCAGCTGAGACGGTTGGACTAAGATGACATTTTTATAAAGGGTGATC
ACAAGTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g45380.1	286	5e-59
Arabidopsis v10	None