barSeed - Barley Seed Development Database

Probe CUST_10953_PI390587928

Source Contig U35_14613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10953_PI390587928	Hv_44K_v2	CAATCGCTGGTCAACTTGATCAATCTTGACACCAACATCAGGAATCATTCGAGCGGAAGT	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21344.1	634	2e-24	259 - 318	100	60 / 60	minus	ABC16291 ABC23156 ABC24312 ABC30267
JLOC1	JLOC1_14817.1	652	8e-25	317 - 376	100	60 / 60	plus
Harvest21	ABC01749	668	3e-25	379 - 438	100	60 / 60	plus
Harvest21	ABC30267	606	8e-21	283 - 334	100	52 / 52	plus	ABC30267
Harvest21	ABC24312	656	8e-21	182 - 233	100	52 / 52	minus	ABC24312
Harvest35	U35_14613	716	3e-25	379 - 438	100	60 / 60	plus
Harvest35	U35_30367	606	8e-21	283 - 334	100	52 / 52	plus
Harvest35	U35_14618	659	8e-21	425 - 476	100	52 / 52	plus

Contig Sequence (716 bp)

>U35_14613 716 Hv_44K_v2
CGCAACCCTCACCCGTGGTGGACCTTGTTGCCAGATCGCTGGATCTGATGAATCCGCTCC
TCTCCGACAAGGCCACAGCTGGATCGGGTCCTCCGCAACAAGGCCACCATTGGATCCCCT
CCTCTCCTCCGCTCCGCCCTCTCCAGTAGCTCTCCATCGCCCTCGCGCCCCAGATCCAAA
CCACCAGCAGTTCGAGGCGAAACCCTCGTGCTCATCACCTCCATCTCCACCACGGAGGGA
AGGCGAAGCCGCTCAAGCAGGCCAAGGTCGCCGAGAAGGACTACAACGAGATGCACGCTG
ATGATTTCCGGCAAGACCTGTATGGTTTAGTCACAGCACTAAAAAATGGTGGTTACTCAG
ATGATATGACCCTTGCTGCAATCGCTGGTCAACTTGATCAATCTTGACACCAACATCAGG
AATCATTCGAGCGGAAGTGTCACCAGCCCTTCGCCACTGCGAGAATATACATTGTGCACA
CTCCTTTACAGTAGCTCGAGGCGTACTAAATAGAATGTAAAGATTGTAATATTGTAATGG
TAGGCATATCTGGGTTGGATTAAACATGTACAGCTTGTAGTAGACTTTTTTACCATTCTT
GTTCTGTTTAAAATATTGATTATGTGATTTGGAAACGTGTGAATTGGAACTAAAAAAAAA
AAAAAATTTATGAAACTAATTTGAGCAGTTTTAAAATTTCAAAAAAAAAAAAAAAA

Homology of Contig U35_14613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None