barSeed - Barley Seed Development Database

Probe CUST_10921_PI390587928

Source Contig U35_14637

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10921_PI390587928	Hv_44K_v2	CAATTTTGCCTCATCTGTTGGGCTGACATGCATCTATAATTCCATCAAATCTTTTCATGT	722	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364348	2837	2e-24	717 - 776	100	60 / 60	plus	ABC01817 ABC01818 ABC01819 ABC02584 ABC06112 ABC33656 ABC35116 ABC40607 ABC52711
JLOC1	JLOC1_23826.1	958	8e-25	804 - 863	100	60 / 60	plus
Harvest21	ABC01818	888	3e-25	797 - 856	100	60 / 60	plus	ABC01818
Harvest35	U35_14637	834	3e-25	723 - 782	100	60 / 60	plus

Contig Sequence (834 bp)

>U35_14637 834 Hv_44K_v2
GGGGGCCGCCGCAGCCACACCCAGAACCAAAACCCTCCCATCGTCCGCTTCCTCTCCACC
GGCGGCCTCCCCGGTCAGATCATCATGTCGACTGAAAAGAAACAGTTGAACACCATGCGG
GAGATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGCCTC
ACTCGCGCTGCCAAGGTGTTGGAGCAGCTGAGCGGGCAGTCGCCAGTTTTCTCCAAGGCG
AGGTACACTGTCAGGTCTTTCGGCATTCGTCGTAATGAGAAGATTGCCTGCTATGTGACA
ATCAGGGGTGAGAAGGCAATGCAGCTTCTCGAGAGTGGGCTGAAGGTGAAGGAGTACGAG
CTCCTGAGGAGGAACTTCAGTGACACTGGTTGCTTTGGGTTTGGTATTCAGGAGCACATT
GATCTTGGCATGAAGTATGACCCGTCAACTGGTATCTATGGTATGGACTTCTTTGTCGTT
CTGGAGCGTGCTGGATACCGTGTCTCCCGCCGGCGCCGATGCAAGGCCCGTGTTGGGATC
CACCAAAGGGTGACCAAGGAAGATGCCATGAAGTGGTTCCAGGTCAAGTATGAGGGTGTC
ATCCTGAACAAGTCCCATGCTAGCTAGTATCCTTTGGACTGATTAAGTTGTTGTTAGAGC
CTAAGTCAGTCCTCCTTCTGGATCATGGAATCGTATGTTTATTGGATACAAAGTTGCACT
ATCAATTTTGCCTCATCTGTTGGGCTGACATGCATCTATAATTCCATCAAATCTTTTCAT
GTTTCATAAAAAAAAAAAAAAAACATTTCATCAACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14059.1	183	2e-105	protein\|ribosomal protein L5, putative, expressed
Brachypodium v1_2	Bradi3g09030.1	181	4e-113
Arabidopsis v10	AT5G45775.2	182	7e-103	Ribosomal L5P family protein \| chr5:18565281-18566496 REVERSE LENGTH=182