- Probe CUST_10904_PI390587928
- Source Contig U35_14641
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10904_PI390587928 | Hv_44K_v2 | ACACTGTCAGGTCGTTTGGTATCAGGCGTAATGAGAAGATCGCGTGCTACGTTACTATTA | 246 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.518 | 0.598 | 1.341 | 1.701 | 0.919 | 1.116 |
| Raw | 5750.277 | 10320.777 | 20358.767 | 41403.167 | 7712.163 | 10318.907 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10588.1 | 931 | 7e-23 | 429 - 488 | 98 | 59 / 60 | minus | ABC01817 ABC01818 ABC01819 ABC37750 ABC40607 |
| JLOC1 | JLOC1_6935.1 | 1214 | 4e-23 | 444 - 503 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01819 | 824 | 3e-25 | 519 - 578 | 100 | 60 / 60 | minus | ABC01819 |
| Harvest21 | ABC43423 | 513 | 1e-23 | 223 - 282 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01817 | 960 | 1e-23 | 268 - 327 | 98 | 59 / 60 | plus | ABC01817 |
| Harvest35 | U35_14641 | 648 | 3e-25 | 247 - 306 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14636 | 964 | 1e-23 | 268 - 327 | 98 | 59 / 60 | plus |
Contig Sequence (648 bp)
>U35_14641 648 Hv_44K_v2 GCTCCCCCCTCCACCTCCCCCTCTCCTCTCCCCCGCCGCCGCCGCTCCCCAGATCCCGCC GCCGCCGCTCCCCAGATCCCGCCGCCATGTCGACGGAGAAGAAGCAGATGAACCCCATGC GGGATATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGCGGAGATCGCC TCACCCGCGCCTCCAAGGTGCTGGAGCAGCTGAGTGGACAATCACCAGTGTTCTCCAAGG CGAGGTACACTGTCAGGTCGTTTGGTATCAGGCGTAATGAGAAGATCGCGTGCTACGTTA CTATTAGGGGTGAGAAGGCGATGCAGCTGCTGGAGAGTGGCCTGAAGGTGAAGGAGTACG AGCTGCTCAGGAGGAACTTCAGCGACACCGGATGCTTTGGCTTCGGTATCCAGGAGCACA TCGATCTCGGCATGAAGTACGATCCATCTACCGGCATCTATGGTATGGACTTCTTCGTGG TGCTTGAGCGTGCTGGGTACCGTGTCTCCCGCCGCCGCAGGTGCAAGGCCCGCGTCGGTA TCCACCAGAGGGTCACCAAGGAGGACGCCATGAAGTGGTTCCAGGTCAAGTATGAGGGTG TCATCCTCAACAAGTCCCATGCGAGCTAAGAAGGATGTAGCTATCGCT
Homology of Contig U35_14641 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g14059.1 | 183 | 8e-108 | protein|ribosomal protein L5, putative, expressed |
| Brachypodium v1_2 | Bradi3g09030.1 | 181 | 5e-115 | |
| Arabidopsis v10 | AT5G45775.2 | 182 | 3e-106 | Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182 |