barSeed - Barley Seed Development Database

Probe CUST_10114_PI390587928

Source Contig U35_21091

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10114_PI390587928	Hv_44K_v2	ATTAAGAACGAGTGGAAAAACGCTAGGTACCCGATGATCCCTGGGCACGAGATCGCCGGC	185	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65244.2	1301	2e-24	1017 - 1076	100	60 / 60	minus	ABC04260 ABC07292 ABC19854
MLOC	MLOC_65244.1	1389	2e-24	1017 - 1076	100	60 / 60	minus	ABC04260 ABC07292 ABC19854
JLOC1	JLOC1_42921.1	1439	8e-25	236 - 295	100	60 / 60	plus
Harvest21	ABC27367	647	3e-25	186 - 245	100	60 / 60	plus
Harvest21	ABC17660	615	3e-25	200 - 259	100	60 / 60	plus
Harvest35	U35_31569	494	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_21091	647	3e-25	186 - 245	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_21091 647 Hv_44K_v2
CACCTNCTACATCCTCCCGAGCCTCACCAACGNATAGAATGACGGCCAGGAAGGCGGTGG
GTCTGGCGGCGCTCGAGAGCTCCGGCCACCTCTCCCCTCTCGCCATAACCCGGAGGAGCA
CTGGAGCTGAGGATGTGGCGATAAAGATTCTCTACTGCGGGATATGCCACTCTGACCTGC
ACAGCATTAAGAACGAGTGGAAAAACGCTAGGTACCCGATGATCCCTGGGCACGAGATCG
CCGGCGAGGTCAGCGAGGTGGGCAAGAAGGTGACCAGGTTCGCGGCCGGCGACCGCGTGG
GCGTCGGGTGCATGGTGAACTCGTGCGGGTCGTGCGAGAGCTGTGCCAAGGGCTGCGAGA
ACCACTGCCCGGCTATGGCCTTCACCTACAACTCGTTCGACGACAGCGGCAGCGGCACCA
ACGCCGTCACCTACGGCGGCTACTCAAGCATGGTGGTGGTGAAGGAGCGCTTCGTTGTCC
GGTTCCCGGAAGCCATGCCGCTGGACAAGGGCGCCCCGCTGCTCTGCGCCGGCATCACCG
TGTACAGCCCCATGAAGCACCACGGGCTCAACATCCCCGGGCTGCACCTCGGCGTTGTGG
GGCTGGGCGGGCTGGGCCACATGGCCGTCAAGTTTGGCAAGGCGTTT

Homology of Contig U35_21091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16910.1	333	2e-100	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g17920.1	372	3e-103
Arabidopsis v10	AT4G37990.1	359	9e-75	\| Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 \| elicitor-activated gene 3-2 \| chr4:17855964-17857388 FORWARD LENGTH=359