barSeed - Barley Seed Development Database

Probe ABC53021

Source Contig ABC53021

barSeed

Links

Affymetrix Source Sequence (2237 bp)

>ABC53021 2237
CCCCCTCCCTCTCCCTCCTCCCTCAAAACTCTCTCTCCCTCCCTGAAAATTCTCCGCATA
CTGGTGCCCAAGTGGTGCCGGCATCCCGCTGAGGGCAGAGAGAGAGAGAGAGAAAGAGAT
CCTCCTCCCCTGTCCCCACTCCCCTGATCCGCCGCCGAGCCGGGACGAGGAGGAGGAGGA
GCTGCAGCTCAGCTCCGCCCCAGCTCAGCCCCCGGAGCCCGAGCTGATCGACCCGCCGGC
AGCGAGATTCGGCCAGGGCACGATCGACGGAGAGATGTACCGGGTGAAGAGCGAGAGCGA
CTGCGAGATGATGCACCAGGAGGACCAGATGGACTCGCCGGTGGGCGACGACGGCAGCAG
CGGCGGAGGGTCGCCTCACAGGGGCGGCGGGCCGCCTCTGAAGAAGGGGCCCTGGACGTC
CGCGGAGGACGCCATCCTGGTGGACTACGTGAAGAAGCACGGCGAGGGGAACTGGAACGC
GGTGCAGAAGAACACCGGGCTGTTCCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGGCGAA
CCACCTCAGGCCCAACCTCAAGAAGGGGGCCTTCACCCCCGAGGAGGAGAGGCTCATCAT
CCAGCTCCACTCCAAGATGGGCAACAAGTGGGCTCGGATGGCCGCTCATTTGCCAGGGCG
TACTGATAATGAAATAAAGAATTACTGGAACACTCGAATAAAGAGATGTCAGCGAGCCGG
TTTGCCAATATATCCTGCTAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAGGGCTC
CAGCGATTTCAACTGCGGCGAGAATCTTTCCAGTGACCTCCTGAATGGAAATGGTCTTTA
TCTGCCAGATTTTACCTGTGACAATTTCATTGCTAATTCAGAGGCTCTATCTTATGCACC
ACAGCTTTCAGCTGTTTCAATAAGCAGTTTGCTTGGCCAGAGCTTTGCATCCAAAAACTG
CGGCTTCATGGATCAAGTAAACCAAGCAGGGATGCTAAAACAGTCTGACCCTTTACTCCC
TGGATTGAGCGACACCATCAATGGCGCGCTCTCCTCGGTCGATCAATTCTCAAATGACTC
TGAGAAGCTCAAGCAGGCTCTTGGTTTTGACTATCTCCACGAAGCCAACTCTAGCAGCAA
GATTATTGCACCATTTGGGGGTGCGCTTACTGGCAGCCATGCCTTTTTAAATGGCACCTT
CTCTACTTCTAGGACCATCAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATAC
CGAATCTGATCCGAATAGCTGGCTCAAGTATACCGTGGCTCCTGCGATGCAGCCTACGGA
GTTGGTTGATCCGTACCTGCAGTCCCCGACAGCAACTCCGTCAGTGAAATCGGAGTGTGC
TTCGCCGAGGAACAGCGGCCTCTTGGAAGAGCTGCTTCATGAAGCTCAGGGACTAAGATC
TGGGAAGAATCAGCAGCTCTCCGTGAGAAGTTCAAGTTCCTCTGTCAGCACGCCGTGTGA
TACCACGGTGGTTAGCCCGGAGTTTGATCTCTGTCAGGAATATTGGGAAGAACGTCTGAA
TGAATATGCCCCATTCAGTGGCAATTCACTCACTGGATCCACCGCTCCTATGAGTGCTGC
GTCGCCTGATGTTTTTCAGCTCTCCAAAATTTCTCCTGCACAAAGCCCTTCACTGGGATC
TGGAGAGCAGGCAATGGAGCCTGCATATGAGCCCGGGGCAGGGGACACTTCGTCTCATCC
TGAAAACTTGAGGCCAGACGCGTTCTTCTCCGGGAACACGGCGGACTCGTCCGTCTTCAA
CAACGCCATAGCCATGCTCCTGGGCAACGACATGAACACGGAGTGCAAGCCTGTTTTCGG
CGACGGTATCATGTTTGATACTTCGGTGTGGAGCAACTTGCCTCATGCTTGTCAAATGTC
GGAGGAATTCAAATGAGTTCCTCACCGAACCTCCAGCGGAGTCGAAGGAGATTCTTGGTA
TCCCTCACCCTGATTGTTTTGAGGAAAAATTCAGAGAAAGCCTCATCGATTGTATACGCT
GCTGCGTGCGTACGCGGCTGCTACCAGATGCGCTCTCCGTTCAACTAAGCCCCTTTTCCC
CAATAAAGTTGGCGGAGATAAGCCGGTTATCTATTTTTTGTTTGTTTGTTTCGAACTAGA
GAACCCTTTTTTGTCATCTCTGTGGCATTTATTTGAACAATGTAAGATCAGTTACTGCTT
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK251726.1	2321	0.0	9 - 2228	99	2217 / 2220	CUST_10053_PI390587928	ABC03665 ABC03667 ABC37285 ABC53021
MLOC_71332.1	1921	0.0	80 - 1919	99	1836 / 1840	CUST_10053_PI390587928	ABC03665 ABC03667 ABC37285 ABC53021
MLOC_71332.2	1877	0.0	42 - 1877	99	1830 / 1836	CUST_10053_PI390587928	ABC03665 ABC03667 ABC37285 ABC53021
MLOC_79408.1	473	0.0	84 - 473	99	389 / 391	None	ABC03667 ABC53021
MLOC_79408.2	793	1e-130	21 - 277	99	256 / 257	None	ABC53021
MLOC_56735.4	3278	5e-120	1250 - 2332	74	814 / 1097	None	ABC03667 ABC53021
AK375052	2485	5e-100	329 - 920	78	464 / 595	None	ABC03667 ABC53021
MLOC_56735.8	3202	2e-98	1235 - 1826	78	462 / 594	None	ABC03667 ABC53021
MLOC_56735.6	2178	2e-98	349 - 940	78	462 / 594	None	ABC03667 ABC53021
MLOC_56735.2	3287	2e-98	1298 - 1889	78	462 / 594	None	ABC03667 ABC53021
MLOC_56735.3	2398	2e-98	405 - 996	78	462 / 594	None	ABC03667 ABC53021
MLOC_56735.1	2734	2e-98	1321 - 1912	78	462 / 594	None	ABC03667 ABC53021
MLOC_56735.7	2181	2e-98	349 - 940	78	462 / 594	None	ABC03667 ABC53021
MLOC_37614.2	926	1e-51	18 - 270	82	212 / 259	None	ABC53021
MLOC_37614.1	811	1e-51	123 - 375	82	212 / 259	None	ABC53021