barSeed - Barley Seed Development Database

Probe CUST_10053_PI390587928

Source Contig U35_50933

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10053_PI390587928	Hv_44K_v2	AATATTGGGAAGAACGTCTGAATGAATATGCCCCATTCAGTGGCAATTCACTCACTGGAT	1538	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.179	0.264	0.852	1.929	1.116	1.434
Raw	4.659	11.626	38.015	132.295	27.179	36.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251726.1	2321	2e-24	1547 - 1606	100	60 / 60	plus	ABC03665 ABC03667 ABC37285 ABC53021
MLOC	MLOC_71332.2	1877	2e-24	664 - 723	100	60 / 60	minus	ABC03665 ABC03667 ABC37285 ABC53021
MLOC	MLOC_71332.1	1921	2e-24	702 - 761	100	60 / 60	minus	ABC03665 ABC03667 ABC37285 ABC53021
JLOC1	JLOC1_47403.1	2017	8e-25	1159 - 1218	100	60 / 60	plus
Harvest21	ABC53021	2237	3e-25	1539 - 1598	100	60 / 60	plus	ABC53021
Harvest21	ABC03667	2696	1e-23	1336 - 1395	98	59 / 60	plus	ABC03667
Harvest35	U35_50933	2237	3e-25	1539 - 1598	100	60 / 60	plus
Harvest35	U35_15709	2697	1e-23	1336 - 1395	98	59 / 60	plus
Harvest35	U35_15707	902	1e-23	30 - 89	98	59 / 60	plus

Contig Sequence (2237 bp)

>U35_50933 2237 Hv_44K_v2
CCCCCTCCCTCTCCCTCCTCCCTCAAAACTCTCTCTCCCTCCCTGAAAATTCTCCGCATA
CTGGTGCCCAAGTGGTGCCGGCATCCCGCTGAGGGCAGAGAGAGAGAGAGAGAAAGAGAT
CCTCCTCCCCTGTCCCCACTCCCCTGATCCGCCGCCGAGCCGGGACGAGGAGGAGGAGGA
GCTGCAGCTCAGCTCCGCCCCAGCTCAGCCCCCGGAGCCCGAGCTGATCGACCCGCCGGC
AGCGAGATTCGGCCAGGGCACGATCGACGGAGAGATGTACCGGGTGAAGAGCGAGAGCGA
CTGCGAGATGATGCACCAGGAGGACCAGATGGACTCGCCGGTGGGCGACGACGGCAGCAG
CGGCGGAGGGTCGCCTCACAGGGGCGGCGGGCCGCCTCTGAAGAAGGGGCCCTGGACGTC
CGCGGAGGACGCCATCCTGGTGGACTACGTGAAGAAGCACGGCGAGGGGAACTGGAACGC
GGTGCAGAAGAACACCGGGCTGTTCCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGGCGAA
CCACCTCAGGCCCAACCTCAAGAAGGGGGCCTTCACCCCCGAGGAGGAGAGGCTCATCAT
CCAGCTCCACTCCAAGATGGGCAACAAGTGGGCTCGGATGGCCGCTCATTTGCCAGGGCG
TACTGATAATGAAATAAAGAATTACTGGAACACTCGAATAAAGAGATGTCAGCGAGCCGG
TTTGCCAATATATCCTGCTAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAGGGCTC
CAGCGATTTCAACTGCGGCGAGAATCTTTCCAGTGACCTCCTGAATGGAAATGGTCTTTA
TCTGCCAGATTTTACCTGTGACAATTTCATTGCTAATTCAGAGGCTCTATCTTATGCACC
ACAGCTTTCAGCTGTTTCAATAAGCAGTTTGCTTGGCCAGAGCTTTGCATCCAAAAACTG
CGGCTTCATGGATCAAGTAAACCAAGCAGGGATGCTAAAACAGTCTGACCCTTTACTCCC
TGGATTGAGCGACACCATCAATGGCGCGCTCTCCTCGGTCGATCAATTCTCAAATGACTC
TGAGAAGCTCAAGCAGGCTCTTGGTTTTGACTATCTCCACGAAGCCAACTCTAGCAGCAA
GATTATTGCACCATTTGGGGGTGCGCTTACTGGCAGCCATGCCTTTTTAAATGGCACCTT
CTCTACTTCTAGGACCATCAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATAC
CGAATCTGATCCGAATAGCTGGCTCAAGTATACCGTGGCTCCTGCGATGCAGCCTACGGA
GTTGGTTGATCCGTACCTGCAGTCCCCGACAGCAACTCCGTCAGTGAAATCGGAGTGTGC
TTCGCCGAGGAACAGCGGCCTCTTGGAAGAGCTGCTTCATGAAGCTCAGGGACTAAGATC
TGGGAAGAATCAGCAGCTCTCCGTGAGAAGTTCAAGTTCCTCTGTCAGCACGCCGTGTGA
TACCACGGTGGTTAGCCCGGAGTTTGATCTCTGTCAGGAATATTGGGAAGAACGTCTGAA
TGAATATGCCCCATTCAGTGGCAATTCACTCACTGGATCCACCGCTCCTATGAGTGCTGC
GTCGCCTGATGTTTTTCAGCTCTCCAAAATTTCTCCTGCACAAAGCCCTTCACTGGGATC
TGGAGAGCAGGCAATGGAGCCTGCATATGAGCCCGGGGCAGGGGACACTTCGTCTCATCC
TGAAAACTTGAGGCCAGACGCGTTCTTCTCCGGGAACACGGCGGACTCGTCCGTCTTCAA
CAACGCCATAGCCATGCTCCTGGGCAACGACATGAACACGGAGTGCAAGCCTGTTTTCGG
CGACGGTATCATGTTTGATACTTCGGTGTGGAGCAACTTGCCTCATGCTTGTCAAATGTC
GGAGGAATTCAAATGAGTTCCTCACCGAACCTCCAGCGGAGTCGAAGGAGATTCTTGGTA
TCCCTCACCCTGATTGTTTTGAGGAAAAATTCAGAGAAAGCCTCATCGATTGTATACGCT
GCTGCGTGCGTACGCGGCTGCTACCAGATGCGCTCTCCGTTCAACTAAGCCCCTTTTCCC
CAATAAAGTTGGCGGAGATAAGCCGGTTATCTATTTTTTGTTTGTTTGTTTCGAACTAGA
GAACCCTTTTTTGTCATCTCTGTGGCATTTATTTGAACAATGTAAGATCAGTTACTGCTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_50933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59660.1	554	0.0	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g53010.1	557	0.0
Arabidopsis v10	AT5G06100.2	520	3e-77	\| Symbols: MYB33, ATMYB33 \| myb domain protein 33 \| chr5:1838555-1840386 FORWARD LENGTH=520