barSeed - Barley Seed Development Database

Probe ABC48290

Source Contig ABC48290

barSeed

Links

Affymetrix Source Sequence (535 bp)

>ABC48290 535
AGTACGTCAACTACTGGTTCGCCGAGGCAGCCGGCGCCGCGCCGCTGCAGTGGAGCAAGG
ACATTTACAAATTCATGGAGCCGTTCGTGAGCAAGAACCCCAGGCAGGCGTACGCCAACT
ACAGGGACATCGACCTCGGCAGGAACGAGGTGGTGAACGACATCTCAACCTACAGCAGCG
GCAAGGTGTGGGGCGAGAAGTACTTCAAGGGCAACTTCCAAAGGCTCGCCATCACCAAGG
GCAAGGTGGATCCCCAGGACTACTTCAGGAACGAGCAGAGCATCCCGCCGCTGCTGGGCA
AGTAGTGACCGAGAGTCTTGCATGGAGATTTGTAGTGCGTGCTTGGCGTTTCTGATGCCC
AACTAGTAGAATAAGGATCAAGCATGTGCTAACTAGTTGGAAGAGTTGCCTACCCTTAGG
TGTTGCTTTTAATGGCGAAAATTAGCAAAGAACAGAGTTGCGTTGGTAGCGCTGCTCAAA
CTTCGGTAGCTTTTCTGTTTTTGTTGCTCTGTATTCATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK377141	1845	0.0	1295 - 1812	100	518 / 518	CUST_13867_PI390587928	ABC12855 ABC48290
MLOC_45205.1	395	0.0	1 - 395	100	395 / 395	None	ABC12855 ABC48290
AK375117	1776	1e-140	1315 - 1627	96	299 / 313	CUST_8427_PI390587928 CUST_8426_PI390587928	ABC12855 ABC48290 ABC52603
MLOC_81831.1	1035	1e-140	551 - 863	96	299 / 313	CUST_8426_PI390587928 CUST_25997_PI390587928	ABC12855 ABC48290 ABC52603