barSeed - Barley Seed Development Database

Probe CUST_13867_PI390587928

Source Contig U35_19914

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13867_PI390587928	Hv_44K_v2	GGTAGCGCTGCTCAAACTTCGGTAGCTTTTCTGTTTTTGTTGCTCTGTATTCATAAAAAA	867	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	20.577	4.501	1.324	0.569	0.323	0.131
Raw	1040.372	333.472	95.858	63.630	11.664	4.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377141	1845	3e-21	1759 - 1812	100	54 / 54	plus	ABC12855 ABC48290
JLOC1	JLOC1_29344.1	487	2e-21	43 - 96	100	54 / 54	minus
Harvest21	ABC48290	535	3e-25	12 - 71	100	60 / 60	minus	ABC48290
Harvest35	U35_19914	938	3e-25	868 - 927	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_19914 938 Hv_44K_v2
CGCGTCATCGCTATGGGGGACAAAGCGACGTTCGAGGCCATGTACCTGGGCACCTGCAAA
ACCCTGACGCCGCTGATGACCAGCAAATTCCCCGAGCTTGGCATGAACCCCTATGACTGC
AACGAGATGTCGTGGATCAAGTCCACCCCCTTCATCCACCTCGGCAACAAGGCCACCCTG
GACGACCTCCTCAACCGGAACAACAGCTTCAAGCCCTTCGCCGAATACAAGTCGGACTAC
GTCTACGAGCCCGTCCCCAAGCCGGTGTGGGAGCAGATCTTCGGCTGGCTCGTGAAGCCC
GGCGCTGGGATCATGATCATGGACCCATACGGCGCCACCATCAGCGCCACCCCCGAAGCG
GCGACGCCGTTCCCTCACCGCAAGGGCGTCCTCTTCAACATCCAGTACGTCAACTACTGG
TTCGCCGAGGCAGCCGGCGCCGCGCCGCTGCAGTGGAGCAAGGACATTTACAAGTTCATG
GAGCCGTACGTGAGCAAGAACCCTAGGCAGGCGTATGCCAACTACAGGGACATCGACCTC
GGCAGGAACGAAGTGGTGAACGACATCTCAACCTACAGCAGCGGCAAGGTGTGGGGCGAG
AAGTACTTCAAGGGAAATTTCCAAAGGCTCGCCATCACCAAGGGCAAGGTGGATCCTCAG
GACTACTTCAGGAACGAGCAGAGCATCCCGCCGCTGCTGGGCAAGTAGTGACCGAGAGTC
TTGCATGGAGATTTGTAGTGCGTGCTTGGCGTTTCTGATGCCCAACTAGTAGAATAAGGA
TCAAGCATGTGCTAACTAGTTGGAAGAGTTGCCTACCCTTAGGTGTTGCTTTTAATGGCG
AAAATTAGCAAAGAACAGAGTTGCGTTGGTAGCGCTGCTCAAACTTCGGTAGCTTTTCTG
TTTTTGTTGCTCTGTATTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_19914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35590.1	532	3e-106	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38260.1	523	5e-146
Arabidopsis v10	AT4G20860.1	530	9e-64	FAD-binding Berberine family protein \| chr4:11172726-11174318 FORWARD LENGTH=530