barSeed - Barley Seed Development Database

Probe ABC43426

Source Contig ABC43426

barSeed

Links

Affymetrix Source Sequence (601 bp)

>ABC43426 601
AAGGTGGAGGCCCGCAACGCGCTGGAGAACTACGCGTACAATATGCGCAACACGGTGCGC
GACGAGAAGATCGCGTCCAAGCTCCCCGACGACGACAAGAAGAAGATCGAGGACTCCATC
GAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGAAGAGTTCGAGGAC
AAGATGAAGGAGCTGGAGAGCATCTGCAACCCCATCATCTCCAAGATGTACCAAGGTGCC
GGCCCGGGCGGCGCAGCCGGCATGGACGAGGACATGCCCAGCGGCGGCGCGGGCGCCGGC
GGCGGGAGCGGTGCCGGGCCCAAGATCGAAGAGGTGGACTAAGCGAGTCGTGACAGGTCC
TGGGAGTGGACGCGGCTATGCCGTGCTTAGAATGTTCTGATGCGTGTGTTCGTGTGGTTC
TGTCGAAGAACGAGGGTGCTTGGATGAGTTTGGTTATAACGATGTAGTACTAGGTTAGTA
GAGGAAATAATAAAATAAACGTGTAAGAGCAGGACCGATACACACATGTGGTTCTTGCAC
TGTGTTGTTTTTGCCCTAAGTCCAGAAAATGAGATATATTTTTATCAAAAAAAAAAAAAA
A

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_4447.1	2577	0.0	2 - 565	99	559 / 565	CUST_26521_PI390587928	ABC00044 ABC00326 ABC00873 ABC43426
MLOC_4447.2	2446	0.0	2 - 565	99	559 / 565	CUST_26521_PI390587928	ABC00044 ABC00326 ABC00873 ABC43426
AK369055	2298	1e-76	1746 - 2051	84	258 / 307	CUST_7862_PI390587928	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC_14228.4	1961	1e-76	237 - 542	84	258 / 307	None	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC_14228.3	2028	1e-76	262 - 567	84	258 / 307	CUST_7862_PI390587928	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC_14228.2	1214	1e-76	410 - 715	84	258 / 307	CUST_27265_PI390587928 CUST_7862_PI390587928	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
MLOC_14228.1	3110	1e-76	456 - 761	84	258 / 307	CUST_27265_PI390587928 CUST_7862_PI390587928	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426 ABC49848
AK376662	2603	1e-66	2090 - 2332	86	208 / 243	None	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426
MLOC_72334.2	2236	1e-66	1678 - 1920	86	208 / 243	None	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426
MLOC_72334.1	2432	1e-66	1874 - 2116	86	208 / 243	None	ABC00044 ABC00319 ABC00326 ABC00873 ABC43426
AK248694.1	2194	4e-56	1747 - 1964	85	185 / 218	CUST_10593_PI390587928 CUST_15435_PI390587928	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
MLOC_12446.5	1941	4e-56	1173 - 1390	85	185 / 218	CUST_10593_PI390587928 CUST_15435_PI390587928 CUST_35719_PI390587928	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
MLOC_12446.3	1300	4e-56	650 - 867	85	185 / 218	CUST_10593_PI390587928 CUST_15435_PI390587928 CUST_35719_PI390587928	ABC00044 ABC00873 ABC43426 ABC49753
MLOC_12446.4	1418	4e-56	927 - 1144	85	185 / 218	CUST_10593_PI390587928 CUST_15435_PI390587928 CUST_35719_PI390587928	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753