- Probe CUST_10593_PI390587928
- Source Contig U35_59
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_10593_PI390587928 | Hv_44K_v2 | AACCACCATCGAGATCGATTCACTCTTTGAGGGAGTTGATTTCTATTCCACCATCACCAG | 119 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.720 | 0.628 | 2.214 | 3.011 | 1.260 | 1.072 |
| Raw | 581.720 | 742.867 | 2469.077 | 5348.990 | 803.530 | 737.694 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248694.1 | 2194 | 2e-24 | 960 - 1019 | 100 | 60 / 60 | plus | ABC00044 ABC00326 ABC00873 ABC43426 ABC49753 |
| MLOC | MLOC_12446.5 | 1941 | 2e-24 | 386 - 445 | 100 | 60 / 60 | plus | ABC00044 ABC00326 ABC00873 ABC43426 ABC49753 |
| MLOC | MLOC_12446.3 | 1300 | 2e-24 | 427 - 486 | 100 | 60 / 60 | plus | ABC00044 ABC00873 ABC43426 ABC49753 |
| MLOC | MLOC_12446.4 | 1418 | 2e-24 | 386 - 445 | 100 | 60 / 60 | plus | ABC00044 ABC00326 ABC00873 ABC43426 ABC49753 |
| JLOC1 | JLOC1_8350.2 | 2312 | 8e-25 | 981 - 1040 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8350.1 | 2611 | 8e-25 | 1079 - 1138 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00738 | 2236 | 3e-25 | 948 - 1007 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00157 | 616 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_432 | 2323 | 3e-25 | 959 - 1018 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_59 | 616 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus |
Contig Sequence (616 bp)
>U35_59 616 Hv_44K_v2 GGTACGTCGCCTTCACCGACTCGGAGCGCCTCATCGGCGATGCCGCCAAGAACCAGGTCT TTGAGGAGGCTCAGGACTTCATGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCAA ACCACCATCGAGATCGATTCACTCTTTGAGGGAGTTGATTTCTATTCCACCATCACCAGG GCCAGGTTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATGGAGCCTGTGGAGAAG TGTCTGAGGGATGCCAAGATGGACAAGAGCACCATCCATGATGTTGTCCTTGTCGGTGGT TCCACCAGAATTCCCAGAGTTCAGCAGCTGCTGCAGGACTTCTTCAACGGGAAGGAGCTC TGCAAGAGCATTAACCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTCCAGGCTGCAATC CTCAGCGGTGAGGGGAACGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTCACCCCACTG TCTCTTGGTCTTGAGACTGCAGGAGGAGTCATGACCGTGCTCATCACAAGGAACACCACC ATTCCCACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGACAACCAGCCTGGTGTGCTC ATCCAGGTGTTTGAGG
Homology of Contig U35_59 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g60620.1 | 650 | 5e-95 | protein|DnaK family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g03720.3 | 615 | 1e-96 | |
| Arabidopsis v10 | AT5G02500.1 | 651 | 9e-94 | | Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651 |