barSeed - Barley Seed Development Database

Probe ABC25552

Source Contig ABC25552

barSeed

Links

Affymetrix Source Sequence (1029 bp)

>ABC25552 1029
GAACACATCACTCGCTTCTCAAGCCCTCCATTCCTCCGCGCGCTCTGCTAGACTCTGCTA
CTGCTTCAGTCAGTCCCCCTTCCTTCTCGTCCATTTAGCCGGCATGGCGTCCAGCGCCTC
CCGGTTCATCAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCAT
CTGCTACACCAGCAACAAGTTCCCCACCGACTACGTGCCCACCGTGTTCGACAATTTCAG
AGCGAACGTGGTGGTGGACGGCACCACCGTGAACCTGGGCCTCTGGGACACTGCAGGGCA
GGAGGACTACAACAGATTGAGACCGCTGAGCTACCGGGGAGCCGACGTCTTCGTGCTCTC
CTTCTCGCTCGTCAGCCGAGCCAGCTACGAGAATGTCATGAAGAAGTGGCTACCGGAGCT
TCAGCACCATGCACCCGGCGTGCCAACAGTGCTGGTTGGTACAAAGCTAGATCTACGTGA
AGACAAGCAATACTTACTTGACCACCCCGGCGTGGTGCCTGTTACTACAGCTCAGGGGGA
GGAACTCCGCAAGCACATCGGTGCAACTTGTTATGTCGAATGCAGCTCAAAGACACAGCA
GAATGTCAAAGCTGTGTTTGATGCTGCCATCAAGGTAGTGATCAAACCTCCAACAAAGCA
GAGGGAAAGGAGGAAGAAGAAAGCACGGCAAGGATGTGCATCATTGGGTACCCTGTCAAG
AAGGAAGCTGGCATGCTTCAAGTGATCAAAGGGGTTCCATGGTGATCAGGGAGTTATTTG
AGCAAGGCGAAAGTGTCACCCTGTGTAGTTTTTATCTCATGTTTTGCAGTTTGCAGTGTG
TATATCTCAAGTTTTGAATCAGCCGATCAACTATTGGAGCTAGCTAGATTACTATGGTGC
ATTGGTGCTTGTAACAAATTAGGAATGTTTTGGTACAGCTTGAGCAATGCTGGGATCTTC
CTTTCATTCCTAAAGATCTTCCTTCTCTTGCTACTGAATGTATCTTGTATTCAGGAGTAA
AATCAGTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359559	1015	0.0	25 - 1015	99	989 / 991	None	ABC05202 ABC12824 ABC16088 ABC25552
MLOC_17869.2	1027	0.0	1 - 805	99	803 / 805	None	ABC12824 ABC25552
MLOC_17869.4	620	0.0	1 - 489	100	489 / 489	None	ABC25552
MLOC_17869.1	484	0.0	1 - 480	99	479 / 480	None	ABC25552
MLOC_17869.3	1161	2e-170	598 - 925	99	327 / 328	None	ABC12824 ABC25552
MLOC_53849.2	1184	2e-170	165 - 744	85	495 / 580	None	ABC05202 ABC12824 ABC16088 ABC25552
MLOC_17869.5	1304	1e-133	807 - 1068	99	261 / 262	None	ABC12824 ABC25552
MLOC_53849.1	1509	2e-116	524 - 997	83	392 / 474	None	ABC12824 ABC25552
MLOC_36545.1	378	2e-105	26 - 233	100	208 / 208	None	ABC25552
MLOC_36731.1	1128	1e-97	418 - 941	79	414 / 524	None	ABC05202 ABC12824 ABC16088 ABC25552
MLOC_17377.2	1246	2e-91	321 - 833	79	407 / 517	None	ABC05202 ABC12824 ABC16088 ABC25552
MLOC_61580.2	909	4e-83	32 - 331	85	257 / 301	None	ABC12824 ABC14069 ABC16088 ABC25552
MLOC_61580.1	880	4e-83	32 - 331	85	257 / 301	None	ABC12824 ABC14069 ABC16088 ABC25552