barSeed - Barley Seed Development Database

Probe ABC23996

Source Contig ABC23996

barSeed

Links

Affymetrix Source Sequence (691 bp)

>ABC23996 691
GCACGAGGAGAAAATGGGTGGCCTTCTTCAAAGATATTGGAGACAGCACCTTCAAGCGAC
GCAGACAGGGAGAAGTTAATTGACGTTATTCAGGACTGGAAAACAGAGAGGTATAAGGCA
ATAATCAAATCTGGAACTGTGGAGCCTAGACCTGGTGTTTTGCGGCTGATGGATGAAGTT
AAGGGCGATGATGTTAAACTGAAAAAACCCGATCCATCGATATATATTACAGCAGCAAAG
AAACTAGGAATAGAAAGCAAGAACTGCCTTGTGGTAGAAGACAGTGTCATTGGACTACAA
GCAGCAAAAGGAGCAGGGATGTCATGTATAATAACATACACACCTTCAACTTCGAACCAA
GATTTCAAGGATGCAATTGCAACCTACCCTGATCTCAGTAACGTGAGGCTTGAGGACCTG
AAGCTACTGCTCCAAGAATCCCTCGTCACTGGATAGTGGAATTCAGCCTTTTTCGGTTGC
TGGCGATCCTACCCCCTAGCCCTAGGGGGTTCAATCCACCCAGGGGTTGGATGATCCCCA
CCTCTCACCCGATCCCCACTAATTCCTTCACCACCAGAATCCCTAAACTAAATCACTGCT
CGGTTAAACCTCTTGTCGAAATTTGAATTGTGCATTGCTGTTACAGTGTGGTGGCAACAG
TGAAACATTTGGAGTTAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK357752	1263	2e-89	469 - 647	100	179 / 179	CUST_30149_PI390587928 CUST_39318_PI390587928	ABC23996
MLOC_38606.8	1739	2e-89	255 - 433	100	179 / 179	CUST_39318_PI390587928 CUST_30149_PI390587928	ABC23996 ABC45547
MLOC_38606.9	1238	2e-89	255 - 433	100	179 / 179	CUST_39318_PI390587928 CUST_30149_PI390587928	ABC23996 ABC45547
MLOC_38606.6	1300	2e-89	266 - 444	100	179 / 179	CUST_39318_PI390587928 CUST_30149_PI390587928	ABC23996 ABC45547
MLOC_38606.7	1249	2e-89	262 - 440	100	179 / 179	CUST_39318_PI390587928	ABC23996
MLOC_38606.2	1412	2e-89	272 - 450	100	179 / 179	CUST_39318_PI390587928	ABC23996
MLOC_38606.1	1015	2e-89	272 - 450	100	179 / 179	CUST_39318_PI390587928	ABC23996
MLOC_38606.5	1192	2e-89	268 - 446	100	179 / 179	CUST_39318_PI390587928	ABC23996
MLOC_38606.10	763	5e-115	440 - 664	100	225 / 225	None	ABC23996
MLOC_38606.3	1278	2e-89	272 - 450	100	179 / 179	CUST_39318_PI390587928	ABC23996
MLOC_38606.4	881	2e-89	272 - 450	100	179 / 179	CUST_39318_PI390587928	ABC23996